DY257935

Overview
NameDY257935
Unique NameDY257935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 3
Query:   42 WYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXX-TYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            WYKT F+ P G DP+ L++ +MG+G  W+NGQ IGR+W                  Y  +KC T C  P+Q  YHVPRSWLKPS NLLV+FEE GG P
Sbjct:  653 WYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGRYWNIISQKDGCDRTCDYRGAYNSDKCTTNCGKPTQTRYHVPRSWLKPSSNLLVLFEETGGNP 750          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL6_ARATH (Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 3
Query:   12 ASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            A L + +P+ WYKTTF+ P G+ P+ LHM +MGKG +W+NG+SIGR+W                        T    PSQ  YH+PR++LKPSGNLLVVFEE GG+P
Sbjct:  611 AGLIKNRPLAWYKTTFDGPNGDGPVGLHMSSMGKGEIWVNGESIGRYWVSFL--------------------TPAGQPSQSIYHIPRAFLKPSGNLLVVFEEEGGDP 697          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   21 AQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEE 317
            ++ QP+TWYK +F+ P G DP+ L++G+MGKG  W+NGQSIGR+W                        TY  NPSQ WYH+PRS+LKP+ NLLV+ EE
Sbjct:  603 SKSQPLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSIGRYWV--------------------SFHTYKGNPSQIWYHIPRSFLKPNSNLLVILEE 681          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.827e-20
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   36 MTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP--XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSG-NLLVVFEEWGGEP 332
            ++WYK  F  P G DP+ + +  +GKG VWINGQSIGR+WP                  Y  +KC   C  P+QRWYHVPRS+L   G N + +FEE GG+P
Sbjct:  624 LSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSIGRYWPSFNSSDEGCTEECDYRGEYGSDKCAFMCGKPTQRWYHVPRSFLNDKGHNTITLFEEMGGDP 725          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.117e-20
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   36 MTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP--XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSG-NLLVVFEEWGGEP 332
            +TWYK  F  P G +P+ + +  +GKG  WINGQSIGR+WP                  Y  +KC   C  P+QRWYHVPRS+L  SG N + +FEE GG P
Sbjct:  622 LTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGRYWPSFNSSDDGCKDECDYRGAYGSDKCAFMCGKPTQRWYHVPRSFLNASGHNTITLFEEMGGNP 723          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   33 PMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            P+TWYKTTF+ PPGND + L++ +MGKG VW+NG+SIGR+W                       +     PSQ  YH+PR +L P  NLLV+ EE GG+P
Sbjct:  582 PLTWYKTTFSTPPGNDAVTLNLTSMGKGEVWVNGESIGRYWV--------------------SFKAPSGQPSQSLYHIPRGFLTPKDNLLVLVEEMGGDP 661          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    3 AQGASLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP------XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWL-KPSGNLLVVFEEWGGEP 332
            +  +++   +P TWYKTTF  P G D + + +  + KG+ W+NG S+GR+WP                          KC T C  PSQ+ YHVPRS+L K   N L++FEE GG+P
Sbjct:  593 SHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGRYWPSYVAADMPGCHHCDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLNKGEPNTLILFEEAGGDP 709          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA13_ORYSJ (Beta-galactosidase 13 OS=Oryza sativa subsp. japonica GN=Os10g0330600 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYT------ENKCRTYCRNPSQRWYHVPRSWLK-PSGNLLVVFEEWGGEP 332
            +P TWYKTTF  P G D + + +  + KG+ W+NG ++GR+WP                          KC T C  PSQR+YHVPRS+LK    N L++FEE GG+P
Sbjct:  622 RPFTWYKTTFQAPAGQDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHHCDYRGVFQAEGDGQKCLTGCGEPSQRYYHVPRSFLKNGEPNTLILFEEAGGDP 729          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   33 PMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            P+TWYK  F+ P G+DP+ + M +M KGM+++NG+ IGR+W                        T   +PSQ  YH+PR++LKP GNLL++FEE  G+P
Sbjct:  625 PITWYKRYFDEPDGDDPIVVDMSSMSKGMIYVNGEGIGRYWTSFI--------------------TLAGHPSQSVYHIPRAFLKPKGNLLIIFEEELGKP 704          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA10_ORYSJ (Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica GN=Os06g0628500 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYT------ENKCRTYCRNPSQRWYHVPRSWLK-PSGNLLVVFEEWGGEP 332
            +P TWYKTTF  P G D + + +  + KG+ W+NG ++GR+WP                          KC T C  PSQR+YHVPRS+LK    N +++FEE GG+P
Sbjct:  603 KPFTWYKTTFQAPAGEDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHHCDYRGVFQAEGDGQKCLTGCGEPSQRFYHVPRSFLKNGEPNTVILFEEAGGDP 710          
The following BLAST results are available for this feature:
BLAST of DY257935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL9_ARATH8.764e-2350.00Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGAL6_ARATH2.550e-2247.66Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BG... [more]
BGA16_ARATH7.419e-2247.47Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGAL_BRAOL1.827e-2045.10Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGAL7_ARATH3.117e-2045.10Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGAL7_ORYSJ2.639e-1945.00Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGA14_ORYSJ1.448e-1737.61Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]
BGA13_ORYSJ1.448e-1740.74Beta-galactosidase 13 OS=Oryza sativa subsp. japon... [more]
BGA12_ORYSJ4.213e-1741.00Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGA10_ORYSJ4.213e-1739.81Putative beta-galactosidase 10 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257935 ID=DY257935; Name=DY257935; organism=Citrus clementina; type=EST; length=781bp
GGGCACAAGGAGCATCGTTGGCCCAAAAACAACCGATGACGTGGTACAAG
ACTACTTTCAATGTACCGCCAGGCAACGACCCATTACCTTTACACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAGAGTATTGGGCGCC
ACTGGCCTGGATATATAGGAAATGGTAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAACAAATGCCGAACTTACTGCCGAAACCCCTCTCA
ACGATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAGAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
ACGAGAACAACATAAACAGCTACGACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATAGTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAAGGTCATTCACTCAAATAGGCAAAAGTGTTAGT
TCCTCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCAACTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGGGA
AAGTAATAGATAGCAGCTTTTTGATTGCATC
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