DY257935

Overview
NameDY257935
Unique NameDY257935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.945e-16
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYT------ENKCRTYCRNPSQRWYHVPRSWLKP-SGNLLVVFEEWGGEP 332
            +P TWYK TF  P G D + + +  + KG+ W+NG ++GR+WP                          +C T C  PSQR+YHVPRS+L     N L++FEE GG+P
Sbjct:  622 RPFTWYKATFEAPSGEDAVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMAGCHRCDYRGAFQAEGDGTRCLTGCGEPSQRYYHVPRSFLAAGEPNTLLLFEEAGGDP 729          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.726e-15
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            QP+TWY+  F+ P G DP+ + +  MGKG +++NG+ +GR+W                             PSQ  YHVPRS L+P GN L+ FEE GG+P
Sbjct:  623 QPLTWYRRRFDPPSGTDPVVIDLTPMGKGFLFVNGEGLGRYWVSYHHALG--------------------KPSQYLYHVPRSLLRPKGNTLMFFEEEGGKP 703          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 3
Query:   27 KQP-MTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEE 317
            K+P MTWY+T F+ P       + M  MGKG++W+NG+ +GR+W                             P+Q  YH+PRS+LKP  NLLV+FEE
Sbjct:  631 KEPGMTWYQTYFDAPESQSAAAIRMNGMGKGLIWVNGEGVGRYWMSFLSPLG--------------------QPTQIEYHIPRSFLKPKKNLLVIFEE 708          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 3
Query:   36 MTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEE 317
            +TWY+T F+ P       + M  MGKG++W+NG+ +GR+W                             P+Q  YH+PRS+LKP  NLLV+FEE
Sbjct:  632 LTWYQTYFDAPESVSAATIRMHGMGKGLIWVNGEGVGRYWQSFLSPLG--------------------QPTQIEYHIPRSFLKPKKNLLVIFEE 705          
The following BLAST results are available for this feature:
BLAST of DY257935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL1_ORYSJ7.945e-1637.96Beta-galactosidase 1 OS=Oryza sativa subsp. japoni... [more]
BGA11_ORYSJ6.726e-1538.61Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGA13_ARATH2.164e-1337.76Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ARATH2.392e-1236.17Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257935 ID=DY257935; Name=DY257935; organism=Citrus clementina; type=EST; length=781bp
GGGCACAAGGAGCATCGTTGGCCCAAAAACAACCGATGACGTGGTACAAG
ACTACTTTCAATGTACCGCCAGGCAACGACCCATTACCTTTACACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAGAGTATTGGGCGCC
ACTGGCCTGGATATATAGGAAATGGTAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAACAAATGCCGAACTTACTGCCGAAACCCCTCTCA
ACGATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAGAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
ACGAGAACAACATAAACAGCTACGACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATAGTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAAGGTCATTCACTCAAATAGGCAAAAGTGTTAGT
TCCTCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCAACTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGGGA
AAGTAATAGATAGCAGCTTTTTGATTGCATC
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