DY257939

Overview
NameDY257939
Unique NameDY257939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2225..2865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.021e-41
Identity = 82/176 (46.59%), Postives = 113/176 (64.20%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 530
            DK+ EPWWP L   + L++++ TI+WVTS HHAAVNFGQY   GY PN P+ AR N+  E    E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RNR+GAG+VPY LL+P +   +  K V
Sbjct:  747 DKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  682 DKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMP--EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.291e-40
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK+EPWW  ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++   + P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAFE+F  KL ++E  I  RN +  L NR G    PY LL P SE G+TGKG+P
Sbjct:  681 DKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMP--EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.633e-39
Identity = 85/179 (47.49%), Postives = 112/179 (62.57%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATED-PSDEQWKFFLEK-PENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK EPWWP ++T ++L+E  T I+WV S  HAAVNFGQY   GY PNRPT +R  +  E+ P  E+    LEK P+   L T  +Q+Q    ++++++LSTHS DE YLG+     W  +     AFEKF  K+ E+E  ID RN D  L+NR G   +PY LL P SE GVTG+G+P
Sbjct:  680 DKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEE----LEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.440e-37
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK+EPWWP ++T +DLIE+ + ++W  S  HAAVNFGQY YGG   NRPT +R  +   +    +++  ++ P+ A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN D KLRNR+G   +PY LL P S+ G+T +G+P
Sbjct:  682 DKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFMP--EKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.799e-37
Identity = 78/177 (44.07%), Postives = 107/177 (60.45%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K +PWWP ++T +DLI+  + IVW  S  HAAVNFGQY YGG   NRPT AR  I  E     ++   ++ P+ A L T   + +    ++++++LS H+ DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY LL   SE G+T KG+P
Sbjct:  685 DLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAE--GTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIP 859          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.799e-37
Identity = 77/183 (42.08%), Postives = 108/183 (59.02%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 533
            D K  PWWP +++  +L +  TTI+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  E++      PE A ++T  SQIQ    +++L+VLS HS DE YLG+   P W  DP     F++F  +L+E+E  +   N DP+L+NRNG    PY LL P +        G+T KG+P
Sbjct:  677 DLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSRRRMP--EPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIP 857          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.182e-35
Identity = 77/182 (42.31%), Postives = 107/182 (58.79%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFS-----EPGVTGKGVP 533
            DK+HE WWP ++T  DLIE  T I+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  +++    E  + A L T   Q+Q    ++I+++LS HS DE YLG+   P W  D     AF++F  +L  +E  I  RN D + +NR G   +PY LL P +     E G+TGKG+P
Sbjct:  702 DKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFM--PEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIP 881          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.182e-35
Identity = 72/177 (40.68%), Postives = 106/177 (59.89%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK+EPWWP ++T ++L+E    I+W  S  HAAVNFGQY YGG   NRPT +R  +   +    +++   + P+ A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF++F  KL ++E  +  RN D KLRNR G   +PY LL P S+ G+T +G+P
Sbjct:  678 DKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMP--EKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIP 852          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K +PWWP L+T +DL+E+   I+W+ S  HAAVNFGQY YGG   NRPT +R  +   +    +++  +   E A L T  S++     ++++++LSTH+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN DP L+ NR G   +PY LL P SE G+T +G+P
Sbjct:  659 DLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLL--PEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIP 834          
The following BLAST results are available for this feature:
BLAST of DY257939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LOX22_HORVU1.021e-4146.59Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOLTU6.620e-4145.76Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXA_SOLLC4.291e-4045.20Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_ARATH3.633e-3947.49Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_PEA4.440e-3742.37Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOXX_SOYBN5.799e-3744.07Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_HORVU5.799e-3742.08Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX5_ARATH3.182e-3542.31Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX3_SOYBN3.182e-3540.68Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN4.156e-3542.13Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257939 ID=DY257939; Name=DY257939; organism=Citrus clementina; type=EST; length=641bp
GTGACAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGAT
TTAATTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGC
AGCTGTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGC
CAACCACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAACAA
TGGAAATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTTCCC
TTCCCAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTATCGA
CTCATTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATGG
CGTGAGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGTT
AATGGAGCTTGAAGGGATTATTGATGCAAGGAATGCAGATCCCAAGTTGA
GGAATAGAAATGGAGCTGGGATGGTGCCATATGAGCTCTTGAAGCCATTT
TCGGAACCTGGTGTTACAGGAAAAGGAGTTCCGTACAGCATCTCTATCTA
GAGTTGAAAATGTTGTTGCAATCGCTCGAATGTTGTGTCAATAAAAACTT
TTGAGAATGAGTTCAAGAATGAATCAAATAAATTGCAGTTN
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