DY257939

Overview
NameDY257939
Unique NameDY257939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2225..2865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 76/183 (41.53%), Postives = 102/183 (55.74%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 533
            D K   WWP +    +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P  E +      PE A + T  SQ+Q    +++++VLS HS DE YLG+   PAW  D     AF +F  +L+E+EG +   N D  L+NRNG    PY LL P +        G+T KG+P
Sbjct:  681 DLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRMP--EPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIP 861          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.001e-34
Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            DKK E WWP L+T ++L +  T I+W+ S  HAA++FG Y Y GY PNRPT + CN+  E P   +++     P+   L TF  Q+Q+   ++I +V S H+ DE YLG+     W +D     AFE+F   L ++E  I   N+    +NR+G   VPY LL P SE G+TGKG+P
Sbjct:  680 DKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLS-CNLMPE-PGSVEYEELKTNPDKVFLKTFVPQLQSLLEISIFEVSSRHASDEVYLGQRDSIEWTKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEEGLTGKGIP 854          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.838e-34
Identity = 73/178 (41.01%), Postives = 105/178 (58.99%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-PGVTGKGVP 533
            D K +PWWP L TP+DLI   + I+W+ S  HAAVNFGQY YGG+  NRPT  R  +   +P  +++       + A L T   +++A   ++++++LS H+ DE YLG+   P W  +     AF++F  KL E+E  I  RN D  LRNRNG   +PY +L P  E  G+T +G+P
Sbjct:  682 DLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLL--PEPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIP 857          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.024e-33
Identity = 73/177 (41.24%), Postives = 107/177 (60.45%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K +PWWP L+T ++L+EI T I+W  S  HAAVNFGQY YGG+  NRPT++R  +   +    +++  ++  + A L T  S+ Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N D  L NR G   +PY LL P SE G+T +G+P
Sbjct:  687 DLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLL--PEKGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-GLTCRGIP 860          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K +PWWP L+T  +L+E+ T I+W  S  HAAVNFGQY YGG   NRPT +R  +  E  ++  +   ++  + A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N DP L +R G   +PY LL P S+ G+T +G+P
Sbjct:  685 DLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAE--YDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIP 859          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.890e-33
Identity = 71/183 (38.80%), Postives = 104/183 (56.83%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 533
            D K   WWP +++  +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P  +++    E PE   + T  SQ Q    ++++++LS HS DE YLG+   P W  DP    AF++F  +L+E+E  +   N DP L+NR G    PY L+ P +        G+T +G+P
Sbjct:  678 DLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMP--EPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIP 858          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.293e-32
Identity = 70/183 (38.25%), Postives = 102/183 (55.74%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 533
            D K   WWP +KT  +L++   TI+W+ S  HAAVNFGQY Y GY PNRP+ +R  +   +P  +++      PE   + T   Q+QA   +++L++LS HS DE YLG+   P W  D     AF++F  +L E+E  + A N DP  +NR G    PY LL P +        G++ +G+P
Sbjct:  685 DIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPMP--EPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIP 865          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.111e-31
Identity = 73/178 (41.01%), Postives = 101/178 (56.74%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIE-PAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K   WW  ++  K+LIE  + ++W+ S  HAAVNFGQY YGGY  NRPT +R  +   +    ++    +  E A L T   +      + I++VLS H+ DE+YLG+ IE   W  D V   AF++F  KL E+E  +  RN D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  686 DLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSRKFM--PEKGTPEYDDLAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIP 861          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.026e-30
Identity = 67/177 (37.85%), Postives = 103/177 (58.19%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG-KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 530
            D K +PWWP +++ ++L+E+ TT++W+ S  HAAVNFGQY YGG   NRPT +R  +   +    ++    + PE   L T   + +    + ++++LS H+ DE YLG ++    W  D     AF++F  KL E+E  +  +N D  LRNR G   +PY LL P SE G+T +G+
Sbjct:  567 DLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFM--PEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEIYLGERDGGDHWTSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEEGLTFRGI 741          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.451e-29
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENA---LLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-------PGVTGKGVP 533
            D K + WWP + T ++L    T I+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  E++       + A    ++T  SQ Q    ++++++LS HS DE YLG+   P W  D     AF++F  +L+++E  I   N +  L+NRNG   +PY LL P +         G+T  G+P
Sbjct:  688 DLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPM--PEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIP 872          
The following BLAST results are available for this feature:
BLAST of DY257939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LOX3_ORYSJ9.259e-3541.53Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOXB_SOLLC6.001e-3441.81Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOXA_PHAVU7.838e-3441.01Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX2_SOYBN1.024e-3341.24Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX2_PEA1.337e-3340.11Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_ORYSJ3.890e-3338.80Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX2_ORYSJ3.293e-3238.25Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_LENCU8.111e-3141.01Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXB_PHAVU4.026e-3037.85Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX4_ORYSJ4.451e-2936.36Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257939 ID=DY257939; Name=DY257939; organism=Citrus clementina; type=EST; length=641bp
GTGACAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGAT
TTAATTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGC
AGCTGTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGC
CAACCACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAACAA
TGGAAATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTTCCC
TTCCCAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTATCGA
CTCATTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATGG
CGTGAGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGTT
AATGGAGCTTGAAGGGATTATTGATGCAAGGAATGCAGATCCCAAGTTGA
GGAATAGAAATGGAGCTGGGATGGTGCCATATGAGCTCTTGAAGCCATTT
TCGGAACCTGGTGTTACAGGAAAAGGAGTTCCGTACAGCATCTCTATCTA
GAGTTGAAAATGTTGTTGCAATCGCTCGAATGTTGTGTCAATAAAAACTT
TTGAGAATGAGTTCAAGAATGAATCAAATAAATTGCAGTTN
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