DY257939

Overview
NameDY257939
Unique NameDY257939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2225..2865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.915e-29
Identity = 69/178 (38.76%), Postives = 100/178 (56.18%), Query Frame = 3
Query:    3 DKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG-KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 533
            D K +PWW  ++T ++L+E    ++W+ S  HAAVNFGQY YGG   NRPT +R     E  S E +    + PE   L T   + +    + ++++LS H+ DE YLG ++    W  D     AF++F  KL E+E  +  +N D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  673 DLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISR-RFMPEKGSPE-YDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIP 848          
BLAST of DY257939 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 3
Query:   45 KDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVT 518
            + L E++T++V+  S  HAAVNF Q  + G+ PN P   R       P  ++ +  L+    ++L+T PS+ QA K +A + +L+  S DE YLG     AW +   ++ A  +F+ KL ++           K++ RN    VPY  L P   P  T
Sbjct:  926 EQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLR-----HPPPKKKGEATLQ----SILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRFQDKLEDI---------SKKIKQRNENLEVPYIYLLPERIPNGT 1064          
The following BLAST results are available for this feature:
BLAST of DY257939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LOX4_SOYBN9.915e-2938.76Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
AOSL_PLEHO3.785e-1231.65Allene oxide synthase-lipoxygenase protein OS=Plex... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257939 ID=DY257939; Name=DY257939; organism=Citrus clementina; type=EST; length=641bp
GTGACAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGAT
TTAATTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGC
AGCTGTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGC
CAACCACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAACAA
TGGAAATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTTCCC
TTCCCAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTATCGA
CTCATTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATGG
CGTGAGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGTT
AATGGAGCTTGAAGGGATTATTGATGCAAGGAATGCAGATCCCAAGTTGA
GGAATAGAAATGGAGCTGGGATGGTGCCATATGAGCTCTTGAAGCCATTT
TCGGAACCTGGTGTTACAGGAAAAGGAGTTCCGTACAGCATCTCTATCTA
GAGTTGAAAATGTTGTTGCAATCGCTCGAATGTTGTGTCAATAAAAACTT
TTGAGAATGAGTTCAAGAATGAATCAAATAAATTGCAGTTN
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