DY257944

Overview
NameDY257944
Unique NameDY257944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.007e-48
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 2
Query:  536 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            SAIGFEG+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSLSN+ LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHI 94          

HSP 2 Score: 63.929 bits (154), Expect = 2.007e-48
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*T---PVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSFIF GAQ FPH SF+EEV VLD HFG+ GM S A+VMG  +  ++            L T   PVYT + +      K+   +FF    E +S  ++ +  GI
Sbjct:  113 GSFIFPGAQTFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLE-MSMTGLSKRNASVFF--KSESSSAAVMTEDSGI 214          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.615e-48
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK  LDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SIP I
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLNSIPPI 110          

HSP 2 Score: 62.3882 bits (150), Expect = 2.615e-48
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSFIF GAQ FPH SFSEEVAVLD +F + G  S A VMG P   ++        ++     PVYT +     + +K+K  +FF    + AS  ++ ++ GI
Sbjct:  129 GSFIFPGAQSFPHRSFSEEVAVLDNYFAKLGAGSKAIVMGSPGKPQK-WHVYSATAETNYDDPVYTLEMCMTGL-DKEKASVFF--KSQSASAAVMTESSGI 226          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.615e-48
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            + VSAIGFEGYEKRLEVSFFEP +F D  G+GLR+L K Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLL SI
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLPSI 92          

HSP 2 Score: 66.2402 bits (160), Expect = 2.615e-48
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQRE----GMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSF+  G QPFPH +FSEEV+VLDGHF + G+ S A++MG  D  ++        P     G     VYT +     + +K+K  +F+ KN E +S G + D  GI
Sbjct:  114 GSFLCPGGQPFPHRNFSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGL-DKEKASVFY-KN-ESSSAGSMTDNSGI 216          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.617e-48
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLLSIP I
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPI 95          

HSP 2 Score: 59.6918 bits (143), Expect = 2.617e-48
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPD 995
            GSFIF GAQ FPH  FSEEVAVLDG FG+ G  S A+++G  D
Sbjct:  114 GSFIFPGAQSFPHRHFSEEVAVLDGFFGKLGSGSMAYILGGSD 156          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.509e-45
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            + +SAIGFEG  +RLEVSFFEP +F D  G+GLR+LSK Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLLLSI
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLLSI 92          

HSP 2 Score: 60.4622 bits (145), Expect = 1.509e-45
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQRE----GMFTPLLLSQGTL*TPVYTSKNVHELVWEKKKGHLFF*KN*EKASPGLLKDTKGI 1172
            GSF+  G QPFP  + SEEV+VLDGHF + G+ S A++MG  D  ++        P   S G     VYT +     + +K K  +FF KN E +S G + D  GI
Sbjct:  114 GSFLCPGGQPFPQRNLSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPAKNSNGD--NNVYTLEMCMSGL-DKDKASVFF-KN-ESSSAGSMTDNSGI 214          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.707e-41
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 2
Query:  524 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            A PVSAIGFEGYEKRLE++F E  VF DP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+YP K++IKTCGTTKLLL+IP I
Sbjct:    9 ASPVSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRI 104          

HSP 2 Score: 50.8322 bits (120), Expect = 2.707e-41
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIP 992
            G+FIF GAQP PH SFSEEVA L+ +FG       A+V+G P
Sbjct:  123 GTFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDP 164          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.989e-41
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            MA PVSAIGFEGYEKRLE++F E  +FADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTT LLL+IP I
Sbjct:    1 MAAPVSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSQKIVIKTCGTTMLLLTIPRI 97          

HSP 2 Score: 50.8322 bits (120), Expect = 5.989e-41
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIP 992
            G FIF GAQP PH SFSEEV VL+ +FG       A+V+G P
Sbjct:  116 GMFIFPGAQPAPHRSFSEEVDVLNRYFGHLNSGGNAYVIGDP 157          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.930e-40
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  530 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP I
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRI 104          

HSP 2 Score: 50.0618 bits (118), Expect = 2.930e-40
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIP 992
            G FIF  AQP PH SFSEEVAVL+ +FG       A+V+G P
Sbjct:  123 GMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDP 164          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.930e-40
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  530 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP I
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRI 104          

HSP 2 Score: 50.0618 bits (118), Expect = 2.930e-40
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 3
Query:  867 GSFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIP 992
            G FIF  AQP PH SFSEEVAVL+ +FG       A+V+G P
Sbjct:  123 GMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDP 164          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.446e-40
Identity = 102/201 (50.75%), Postives = 119/201 (59.20%), Query Frame = 2
Query:  521 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXXXXXXXXXXKLHICWGSAISTR*LL*GSSCP*WTLWXIWYGQHSFCHGYS*HTKRRHVYSASAEPGNPVNPSLHFKKCA*IGLGKKEGASVLLK 1123
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I                     +         R      +        +  G  ++  G +   ++ HVYSASAE      P    + C   GL KK  ASV  K
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKYTRGSFNFPEVQPYPHRNFSEEVAILDGYFGKLGTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIYTLEMCM-TGLDKK-SASVFFK 199          
The following BLAST results are available for this feature:
BLAST of DY257944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM_HELAN2.007e-4881.52S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM2_DIACA2.615e-4877.89S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU2.615e-4879.35S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_PEA2.617e-4881.05S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM1_BRAJU1.509e-4577.17S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_MAIZE2.707e-4171.88S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH5.989e-4170.10S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_ORYSJ2.930e-4072.34S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI2.930e-4072.34S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_IPONI4.446e-4050.75S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257944 ID=DY257944; Name=DY257944; organism=Citrus clementina; type=EST; length=1307bp
GCGGGGGAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAA
CAGAGTTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTT
CTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTT
CGTTATATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGG
TAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTT
ACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCA
GCTGCTTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTG
TCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTT
TTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTT
CGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCA
TTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTT
GAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTT
TGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGG
ATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAAT
GAATATCTTGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCC
TTACAAAGTTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAA
TCCCTGCCATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCT
GTGAGATACACTCGGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTC
CACACGGTAGCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGN
CAATTTGGTATGGACAGCACAGCTTTTGTCATGGGTATTCCTGACACACA
AAGAGAAGGCATGTTTACTCCGCTTCTGCTGAGCCAGGGAACCCTGTAAA
CCCCAGTTTACACTTCAAAAAATGTGCATGAATTGGTTTGGGAAAAAAAG
AAGGGGCATCTGTTCTTTTAAAAAAATTAAGAGAAAGCCTCACCCGGGTT
ATTGAAAGACACCAAAGGAATCCTTGGGGCATCCGAAAAAAAAAATCCTT
CCCCAAAAAAAACGGAAAAAAATTTTTTGGGAAAATTTTTTGAAGATTAT
TTTTCAAACCCCCCCTTTTTGGGGTGGTTTTTTACCCCCCCCCCCCAGAG
GAAAAAA
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