DY257944

Overview
NameDY257944
Unique NameDY257944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.748e-36
Identity = 91/194 (46.91%), Postives = 113/194 (58.25%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXXXXXXXXXXKLHICWGSAISTR*LL*GSSCP*WTLWXIWYGQHSFCHGYS*HTKRRHVYSASAEPGNPVNPSLHFKKCA*IGLGKKEGA 1108
            + +SAIGFEGYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSLSN+ LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +                         G     R      S        +     ++  G    TK+ HVY+ASA+  +  N +++  +    GL +++ A
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAA 194          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.982e-36
Identity = 94/199 (47.24%), Postives = 116/199 (58.29%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXXXXXXXXXXKLHICWGSAISTR*LL*GSSCP*WTLWXIWYGQHSFCHGYS*HTKRRHVYSASAEPGNPVNPSLHFKKCA*IGLGKKEGASVLLK 1123
            + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSLSN+ LDSYVLSESSLF++PYK++IKTCGTTKLLLSI  +                         G     R      S        +     ++  G    TK+ HVYSAS+   N  N     + C   GL  K+ ASV  K
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDSYVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELSLDVKAVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYTLEMCM-TGL-DKDKASVFYK 197          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.133e-35
Identity = 94/199 (47.24%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXXXXXXXXXXKLHICWGSAISTR*LL*GSSCP*WTLWXIWYGQHSFCHGYS*HTKRRHVYSASAEPGNPVNPSLHFKKCA*IGLGKKEGASVLLK 1123
            + +SAIGFEGYEKRLEVSFFEP  F D  G GLR+L++ QLDEIL PA C IVSSLSN++LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +                         G     R      S        +     ++  G     K+ HVY+ASA+  +  N +++  +    GL  KE ASV  K
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDHLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTKLGLNSVAYLMGNDDENKKWHVYAASAQTSSDCNNNVYTLEMCMTGL-DKEKASVFYK 198          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.525e-35
Identity = 93/199 (46.73%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  527 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXXXXXXXXXXKLHICWGSAISTR*LL*GSSCP*WTLWXIWYGQHSFCHGYS*HTKRRHVYSASAEPGNPVNPSLHFKKCA*IGLGKKEGASVLLK 1123
            + +SAIGFEG+EKRLE++FFEP +F DP G+GLR+L K QLDEIL PAECTIV SL+NE +DSYVLSESSLF+Y YK+IIKTCGTTKLL +IP I                           + + R      +        +  G  +F  G     ++ HVYSASAE  +   P    + C   GL KKE ASV  K
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFIYAYKIIIKTCGTTKLLRAIPPILRLAGKLSLDVKSVRYTRGSFIFPGAQSYAHRSFSEEVAVLDGYFGKLAAGSKAFVMGDPAKPQKWHVYSASAETISFEEPVYTLEMCM-TGL-KKEKASVFFK 197          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.720e-18
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  545 GFEGYEKRLEVSFFE------PGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLL 793
            GFEG EK+L++ F          +   P   GLR++ K +   +L  A CTI+S  SN+++DSYVLSESSLFVYP + +IKTCGTT LL
Sbjct:   28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDHMDSYVLSESSLFVYPRRAMIKTCGTTTLL 116          

HSP 2 Score: 27.7202 bits (60), Expect = 1.720e-18
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  891 QPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            Q FPH SFS+EV  L+  F     D  A+VMG
Sbjct:  149 QVFPHCSFSDEVNFLNKIF-----DGQAYVMG 175          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.349e-16
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            FEG EK LE+ F +       G   LR++   +L  +L  A+C I+ S SNE +DSYVLSESS+F+  +++I+KTCGTT+LL +I  I
Sbjct:   30 FEGAEKLLEIWFDKN----QNGATSLRNIPYSELVSMLDIAQCRILHSKSNECMDSYVLSESSMFISDFRIILKTCGTTRLLHAIERI 113          

HSP 2 Score: 30.8018 bits (68), Expect = 9.349e-16
Identity = 19/65 (29.23%), Postives = 29/65 (44.62%), Query Frame = 3
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMGIPDTQREGMFTPLLLSQGTL*TPVYT 1064
            +F+    QP+PH SF  EV  L+ HF       +A+ +G P  Q       ++  Q     P +T
Sbjct:  135 NFMHPEKQPYPHSSFETEVDYLEEHFA----GGSAYCIG-PQRQDRWFLYTMVTPQAVFPFPEHT 194          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_SCHPO (S-adenosylmethionine decarboxylase proenzyme OS=Schizosaccharomyces pombe GN=spe2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.813e-14
Identity = 40/92 (43.48%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  548 FEGYEKRLEVSFFEPGVFADPGGR----GLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            FEG EK LE+ F  P       G     GL+++S++  D++L  A+C ++S +++E +D+Y+LSESS+FV+ +K+I+KTCGTT LL S+P +
Sbjct:   20 FEGPEKLLELWFSAPIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRL 111          

HSP 2 Score: 21.1718 bits (43), Expect = 2.813e-14
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHF 947
            +F++   Q  PH S+ EEV  L   F
Sbjct:  132 NFLYPERQLAPHTSWEEEVRYLQLFF 157          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.633e-13
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            FEG EK LE+ F           R LR + + ++D +L  A C I+ S  NE +DSYVLSESSLF+   +VI+KTCGTT+LL ++P I
Sbjct:   25 FEGAEKLLELWFCSS---TQNETRSLRIIPREEIDAMLDIARCKILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVI 109          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.061e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91          

HSP 2 Score: 23.0978 bits (48), Expect = 4.061e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMG 150          
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.061e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91          

HSP 2 Score: 23.0978 bits (48), Expect = 4.061e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMG 150          
The following BLAST results are available for this feature:
BLAST of DY257944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM1_ARATH1.748e-3646.91S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM2_ARATH2.982e-3647.24S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM3_BRAJU1.133e-3547.24S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM_SPIOL2.525e-3546.73S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM_DICDI1.720e-1849.44S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_ONCVO9.349e-1646.59S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_SCHPO2.813e-1443.48S-adenosylmethionine decarboxylase proenzyme OS=Sc... [more]
DCAM_CAEEL4.633e-1347.73S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_RAT4.061e-1243.53S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU4.061e-1243.53S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257944 ID=DY257944; Name=DY257944; organism=Citrus clementina; type=EST; length=1307bp
GCGGGGGAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAA
CAGAGTTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTT
CTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTT
CGTTATATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGG
TAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTT
ACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCA
GCTGCTTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTG
TCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTT
TTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTT
CGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCA
TTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTT
GAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTT
TGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGG
ATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAAT
GAATATCTTGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCC
TTACAAAGTTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAA
TCCCTGCCATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCT
GTGAGATACACTCGGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTC
CACACGGTAGCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGN
CAATTTGGTATGGACAGCACAGCTTTTGTCATGGGTATTCCTGACACACA
AAGAGAAGGCATGTTTACTCCGCTTCTGCTGAGCCAGGGAACCCTGTAAA
CCCCAGTTTACACTTCAAAAAATGTGCATGAATTGGTTTGGGAAAAAAAG
AAGGGGCATCTGTTCTTTTAAAAAAATTAAGAGAAAGCCTCACCCGGGTT
ATTGAAAGACACCAAAGGAATCCTTGGGGCATCCGAAAAAAAAAATCCTT
CCCCAAAAAAAACGGAAAAAAATTTTTTGGGAAAATTTTTTGAAGATTAT
TTTTCAAACCCCCCCTTTTTGGGGTGGTTTTTTACCCCCCCCCCCCAGAG
GAAAAAA
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