DY257944

Overview
NameDY257944
Unique NameDY257944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.061e-12
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91

HSP 2 Score: 23.0978 bits (48), Expect = 4.061e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMG 150
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.061e-12
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91

HSP 2 Score: 23.0978 bits (48), Expect = 4.061e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMG 150
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.061e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91

HSP 2 Score: 23.0978 bits (48), Expect = 4.061e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMG 150
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_LEIIN (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.811e-12
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 2 
Query:  530 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNEY++SYVL+ESSLFV   ++I+ TCGTT LL SIP I
Sbjct:   36 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNI 126

HSP 2 Score: 23.0978 bits (48), Expect = 6.811e-12
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHF 947
            ++ F   Q  PH S ++E A L  HF
Sbjct:  146 NYSFPWMQKGPHTSLADEFATLKQHF 171
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_LEIDO (S-adenosylmethionine decarboxylase proenzyme OS=Leishmania donovani PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.816e-12
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 2 
Query:  530 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI 811
            P     FEG EKRLEV         +    GLRSL       ++      IVS  SNEY++SYVL+ESSLFV   ++I+ TCGTT LL SIP I
Sbjct:   26 PEQGFSFEGPEKRLEVIL---RCTLETHVDGLRSLDDSVWSGVVGSLNAQIVSRESNEYINSYVLTESSLFVMKNRIILITCGTTTLLNSIPNI 116

HSP 2 Score: 23.0978 bits (48), Expect = 6.816e-12
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHF 947
            ++ F   Q  PH S ++E A L  HF
Sbjct:  136 NYSFPWMQKGPHTSLADEFATLKQHF 161
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.889e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKAL 91

HSP 2 Score: 21.9422 bits (45), Expect = 8.889e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMG 150
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.889e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSI 802
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSIFVSKRRFILKTCGTTLLLKAL 91

HSP 2 Score: 21.9422 bits (45), Expect = 8.889e-12
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3 
Query:  870 SFIFAGAQPFPHGSFSEEVAVLDGHFGQFGMDSTAFVMG 986
            +F+    Q +PH +F EE+  L+  F     +  A+ MG
Sbjct:  116 NFMKPSHQGYPHRNFQEEIEFLNVIF----PNGAAYCMG 150
[Close]
BLAST of DY257944 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.517e-11
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  548 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTT 784
            FEG EK LE+ F E    +  G   LR++S+   + +L    C I+S+  N+ +D++VLSESS+FV   + I+KTCGTT
Sbjct:    9 FEGVEKLLEIWFEE----SSNGDDDLRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLSESSMFVSKRRWILKTCGTT 83

HSP 2 Score: 23.8682 bits (50), Expect = 5.517e-11
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3 
Query:  888 AQPFPHGSFSEEVAVLDGHF 947
            AQ  PH  F+EEV  LD  F
Sbjct:  119 AQITPHQGFTEEVTYLDSIF 138
The following BLAST results are available for this feature:
BLAST of DY257944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCAM_HUMAN4.061e-1243.53S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_BOVIN4.061e-1243.53S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]
DCAM1_MOUSE4.061e-1243.53S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_LEIIN6.811e-1246.81S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]
DCAM_LEIDO6.816e-1246.81S-adenosylmethionine decarboxylase proenzyme OS=Le... [more]
DCAM2_MUSSP8.889e-1243.53S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE8.889e-1243.53S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_DROME5.517e-1143.04S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257944 ID=DY257944; Name=DY257944; organism=Citrus clementina; type=EST; length=1307bp
GCGGGGGAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAA
CAGAGTTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTT
CTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTT
CGTTATATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGG
TAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTT
ACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCA
GCTGCTTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTG
TCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTT
TTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTT
CGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCA
TTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTT
GAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTT
TGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGG
ATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAAT
GAATATCTTGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCC
TTACAAAGTTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAA
TCCCTGCCATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCT
GTGAGATACACTCGGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTC
CACACGGTAGCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGN
CAATTTGGTATGGACAGCACAGCTTTTGTCATGGGTATTCCTGACACACA
AAGAGAAGGCATGTTTACTCCGCTTCTGCTGAGCCAGGGAACCCTGTAAA
CCCCAGTTTACACTTCAAAAAATGTGCATGAATTGGTTTGGGAAAAAAAG
AAGGGGCATCTGTTCTTTTAAAAAAATTAAGAGAAAGCCTCACCCGGGTT
ATTGAAAGACACCAAAGGAATCCTTGGGGCATCCGAAAAAAAAAATCCTT
CCCCAAAAAAAACGGAAAAAAATTTTTTGGGAAAATTTTTTGAAGATTAT
TTTTCAAACCCCCCCTTTTTGGGGTGGTTTTTTACCCCCCCCCCCCAGAG
GAAAAAA
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