DY257952
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 99/303 (32.67%), Postives = 156/303 (51.49%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDN-------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV-HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF-VEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A+ GTGKTAAF I + ++ Q + +I+ PTREL +Q ++ L K+ + VM GG + +L +LV TPGR+LD +++G L ++V+DEAD++L F P V Q+IR P RQ L+FSATF V + ++ P ++ + E + + + V K L L ++ + ++F N + V + +++T+ G S + + Q R R FR G R LV TD+ RGI I ++ VINF P++P+ Y+HR+GR+GR G G Sbjct: 53 AQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG 355
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAB (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rhlB PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 99/303 (32.67%), Postives = 156/303 (51.49%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDN-------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV-HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF-VEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A+ GTGKTAAF I + ++ Q + +I+ PTREL +Q ++ L K+ + VM GG + +L +LV TPGR+LD +++G L ++V+DEAD++L F P V Q+IR P RQ L+FSATF V + ++ P ++ + E + + + V K L L ++ + ++F N + V + +++T+ G S + + Q R R FR G R LV TD+ RGI I ++ VINF P++P+ Y+HR+GR+GR G G Sbjct: 53 AQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG 355
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA8 (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain LESB58) GN=rhlB PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 99/303 (32.67%), Postives = 156/303 (51.49%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDN-------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV-HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF-VEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A+ GTGKTAAF I + ++ Q + +I+ PTREL +Q ++ L K+ + VM GG + +L +LV TPGR+LD +++G L ++V+DEAD++L F P V Q+IR P RQ L+FSATF V + ++ P ++ + E + + + V K L L ++ + ++F N + V + +++T+ G S + + Q R R FR G R LV TD+ RGI I ++ VINF P++P+ Y+HR+GR+GR G G Sbjct: 53 AQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG 355
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 102/328 (31.10%), Postives = 158/328 (48.17%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQ--------DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-AN------------------------RQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFV--EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A G+GKTAAF +P L I + N+ +IL PTREL Q ++ L V+ GG SL++ L ++V TPGR++D ++ + + C ++MDEAD+++ F+ + +++ LP AN RQ +M++AT P V+ KYL++P ++ + + + + Q FV E+++K L S I+F N E++AK I GYS +H Q+ R RNG LV TDL RGID+ V++V+NF+ P + E Y HR+GR+GR G G Sbjct: 313 AVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKPDTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYSTVTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAGKSG 640
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: PRP28_ASPCL (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus GN=prp28 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 97/325 (29.85%), Postives = 162/325 (49.85%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPAL------EKIDQ----DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN--------------------RQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFV--EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A G+GKTA+F +P L +ID+ N+ ++L PTRELA Q K+ + L V+ GG SL++ L +++ TPGR++D ++ + +L C ++MDEAD+++ F+ V +++ LP RQ +M++AT P V+ KYL++P ++ + + + Q + E+++K + L S I+F N + +A++I +G+S +H QD R RNG+ LV TDL RGID+ V++V+NF+ + E+Y HR+GR+GR G G Sbjct: 410 AVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLRNGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALPVTNEKPDSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSG 734
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: DBP5_ASPOR (ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae GN=dbp5 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 107/315 (33.97%), Postives = 166/315 (52.70%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKID----QDNNVIQVVILVPTRELALQTSQVCKELGKHL---NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR---FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFV-EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NPETYLHRVGRSGRFGHLG 878 +++GTGKTAAF + AL ++D Q Q +IL PTRELA Q V + +G+ L N+ V S I ++VGTPG ++D+ +K V + +LV+DEAD +L Q +Q IR LP + Q+++FSATFP V + K+ + + L +ELT++GI Q Y +E K L L+ L + SIIF + + K++ G++ + + R+ V FR G + L+ T++ RGID+ V++VIN+D P+ + +TYLHR+GR+GRFG +G Sbjct: 124 SQSGTGKTAAFVLNALSRLDLSTEQAQKTPQALILAPTRELARQIVGVIQCMGQFLDGLNVSTAVPADTNSRHSKIES-----SVVVGTPGTVMDMIRKRVMVANKLKVLVLDEADNMLDQ--QGLGDQCIRVKALLPKDIQVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQLYGLLTVASSIIFVKTRASAAEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGQAKVLITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVG 431
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.382e-37 Identity = 106/317 (33.44%), Postives = 170/317 (53.63%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDNNVIQ----VVILVPTRELALQTSQVCKELGKHLNIQVMVT-----TGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR---FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK-----------NPETYLHRVGRSGRFGHLG 878 +++GTGKTAAF + L ++D + +Q +IL PTRELA Q V + +G+ L+ V+ T TG K + ++VGTPG ++D+ K+ + I +LV+DEAD +L Q +Q IR LP + Q+++FSATFP V ++ K+ + I L +ELT++GI Q Y + K L L+ L + SIIF + + + K++ G++ + + R+ V FR G + L+ T++ RGID+ V++VIN+D P+ + +TYLHR+GR+GRFG +G Sbjct: 120 SQSGTGKTAAFVLNILSRLDLSSEQLQKTPQALILAPTRELARQIVGVIQVMGQFLDGLVIGTAVPADTGARPAKMECS-------VVVGTPGTVMDMIKRRIMIANKLRVLVLDEADNMLDQ--QGLGDQCIRVKALLPRDIQVVLFSATFPAHVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKYQTLVNLYGLLTVGSSIIFVKTRASAQEIEKRMVAEGHTVASLTGGIEGSQRDAVIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVG 427
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 3.111e-37 Identity = 95/301 (31.56%), Postives = 162/301 (53.82%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDNNVI-----QVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN--RQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL--TLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A+ G+GKTAAF +P L K+ +D + + QVVI+ PTRELA+Q ++ +++ + GGTS + + + H+++ TPGR+LD + +D +V+DEAD++L F + +++ + Q LMFSATFP ++ ++L K YV + + + Q V + K L + S+ Q + +I+F + + LA ++E + IH LQ R + DF+NG+ + L+ T + +RG+DI+ + VIN+D P + Y+HR+GR+GR G+ G Sbjct: 289 AQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSE-QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 587
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: RRP3_ENCCU (ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon cuniculi GN=RRP3 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 3.111e-37 Identity = 91/294 (30.95%), Postives = 151/294 (51.36%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKD-CSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 ++ G+GKT AF +P + + Q N +++ PTREL+ Q ++ C + + ++V + GG + +L + H++VGTPGRI + K + V+DEAD+ +F +E +I L RQ L+F+AT + L++P I ++ T+ + +YY FV + K L L Q I+F + +++ + LG+ +H ++ Q+ R F+ LVCTDL +RG+DI V++VINFD PK+ + Y+HRVGR+ R G G Sbjct: 45 SQTGSGKTLAFVLPIVSHLLQKNRSFYCLVVAPTRELSSQIAE-CFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSG 337
BLAST of DY257952 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 3.111e-37 Identity = 98/303 (32.34%), Postives = 157/303 (51.82%), Query Frame = 3 Query: 3 AKNGTGKTAAFCIPALEKIDQDN-------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNPETYLHRVGRSGRFGHLG 878 A+ GTGKTAAF I + ++ Q + +I+ PTREL +Q ++ L K+ + VM GG + L + +LV TPGR+LD +++G L ++V+DEAD++L F P V Q+IR P + RQ L+FSATF V + ++ P ++ + E + + + Q+ V K L L ++ + + ++F N + V + +K+ G + + + Q R R FR G LV TD+ RGI I ++ VINF P++P+ Y+HR+GR+GR G G Sbjct: 53 AQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSG 355 The following BLAST results are available for this feature:
BLAST of DY257952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257952 ID=DY257952; Name=DY257952; organism=Citrus clementina; type=EST; length=1192bpback to top |