DY257956

Overview
NameDY257956
Unique NameDY257956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 4.300e-45
Identity = 96/192 (50.00%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  230 QYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            Q D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K I E LA+E+I AA   S S+AIK+K+EIER+A ++R
Sbjct:    7 QLDIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.300e-45
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 96/190 (50.53%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K I E LA+E+I AA     S+AI+KK+EIER+A ++R
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIALSSR 194          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.640e-44
Identity = 91/190 (47.89%), Postives = 129/190 (67.89%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  LT GAR  AF +   I E LA+E++ AA     SYAI+KK+EIER+A ++R
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQKKEEIERIALSSR 198          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.754e-44
Identity = 92/187 (49.20%), Postives = 124/187 (66.31%), Query Frame = 2
Query:  245 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADEL+ AA     SYA++K++E+ER+A A+R
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.754e-44
Identity = 92/191 (48.17%), Postives = 132/191 (69.11%), Query Frame = 2
Query:  233 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AFRN K I ECLA+E+I AA+  +  ++I++K+EIER+A+A R
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.209e-44
Identity = 91/189 (48.15%), Postives = 125/189 (66.14%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.110e-44
Identity = 95/191 (49.74%), Postives = 131/191 (68.59%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 805
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A ++ K I E LA+E+I AA+G    SYA++KK+E ERVA++ R
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARGDMQKSYAVRKKEETERVAQSAR 191          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.059e-43
Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF N  +I E LA+E+  AA     SYA++KK+EIER+A ++R
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHNPISIEEALAEEIALAASNDPKSYAVQKKEEIERIALSSR 198          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.171e-42
Identity = 94/190 (49.47%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F N K I E LA+E+I AA   + S AI+KK+EIER+A ++R
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIALSSR 195          
The following BLAST results are available for this feature:
BLAST of DY257956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS7_SULSO4.300e-4550.0030S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_PYRIL4.300e-4550.7930S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_SULTO1.251e-4450.5330S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_DESMO3.640e-4447.8930S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_THENV4.754e-4449.2030S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_METKA4.754e-4448.1730S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_PYRAE6.209e-4448.1530S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METJA8.110e-4449.7430S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_DESK11.059e-4347.8930S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_SULAC1.171e-4249.4730S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257956 ID=DY257956; Name=DY257956; organism=Citrus clementina; type=EST; length=1028bp
GGTCTCCCAACACTCAGAAGAGAACTCAGCGAGCGGCTGCCGATTCTTAT
TATTCCTTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCTTTTTC
TTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCATTTTTAGTTCGA
AAAACATTGTCTTTTAATATTTTGTTGTGTAGGAATGGCGACTGCTGTAG
TGGCACAATCTCAAGACCCATCACAGCCTCAATACGATGTGAAGCTCTTC
AATAGGTGGACTTTTGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGA
TTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTG
CTGGGAGGTACTCAGCTAAGCGCTTTCGGAAGGCCCAATGTCCCATTGTT
GAGAGGCTTACGAACTCTCTAATGATGCACGGTCGTAACAATGGCAAGAA
ATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAAATCATTCACCTTT
TGACTGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGT
GGTCCAAGGGAAGATGCTACCCGCATTGGATCTGCTGGCGTTGTTAGGCG
TCAGGCTGTTGATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATT
TGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATGTCAAGACTATT
GCGGAATGTTTGGCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAA
CAGCTATGCCATCAAGAAGAAGGATGAGATCGAGCGAGTTGCTAAGGCCA
ATCGCTGAACTTTGGACAATGTTTTGTTTTTTATTTTTATTTTCTCAAAC
TTTGGACAATGTTTTGTCTCTATTTTTGGCGGATATTTATTATGATCATT
TATTACTTTAAAATAGATAAAGGTAAAAAGTTTATTGGGCNANNNNNAAN
GAANAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGAAAAAGAAAAAA
AAAGGAGAAAGGGANAAGAAAGGGGTTT
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