DY257956

Overview
NameDY257956
Unique NameDY257956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METVS (30S ribosomal protein S7P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps7p PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.985e-38
Identity = 86/191 (45.03%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 805
            ++KLF +W    V V D SL  +I +    +   +PHTAGR S K F K +  +VERL N LM    N GKK   + I++ A+ I+   T +NPIQV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   ++ GA + A ++ K+IA+CLADEL+ A+K     S+A+KKK+E ERVA++ R
Sbjct:    8 EIKLFGKWDSTSVTVKDPSLKSHISL----NPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMATQVNTGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 194          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 5.091e-38
Identity = 78/189 (41.27%), Postives = 126/189 (66.67%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F++ ++I  CLADE+I AA     S+A+ +KD IERVAKA R
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASFKSRRSIQNCLADEIIAAANYDVKSFAVSRKDSIERVAKAAR 185          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 5.091e-38
Identity = 78/188 (41.49%), Postives = 124/188 (65.96%), Query Frame = 2
Query:  242 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:    6 KIFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.650e-38
Identity = 78/188 (41.49%), Postives = 124/188 (65.96%), Query Frame = 2
Query:  242 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:    6 KIFGKWDPTEVEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.650e-38
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 2
Query:  203 AQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            A+S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+     AE LA++L  AA  +  +YAI +K E ERVA A R
Sbjct:   16 AESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVAAAAR 210          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 6.650e-38
Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = 2
Query:  188 ATAVVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            A A  A+  +P   +   KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+QA+  L  G    +F+   T AE LA +LI AA     +YA+ +K+E ERVA A R
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDDVQTYAVNQKEEKERVAAAAR 206          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.685e-38
Identity = 79/189 (41.80%), Postives = 123/189 (65.08%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S+AI +KD  ERVAKA R
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAFKSKRSVAECLATELIGAANRDTKSFAINRKDAKERVAKAAR 185          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.527e-37
Identity = 80/187 (42.78%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  245 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G   ++ +  K +A  LA+ELI AA G    Y++ K++E ERVAK+ R
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANALAEELIAAANGDVKCYSVAKREERERVAKSAR 194          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.527e-37
Identity = 77/188 (40.96%), Postives = 125/188 (66.49%), Query Frame = 2
Query:  242 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            KLF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G+ ++AF++ ++ AECLA ELI A+   +  ++I +KD  ERVAKA R
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 186          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.629e-37
Identity = 83/203 (40.89%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  197 VVAQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            V AQ +  + PQ    LFN+W   +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+ ++ K  +  LADELI A+KG +  Y++ KK+E ER+AK+ R
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAKSAR 204          
The following BLAST results are available for this feature:
BLAST of DY257956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS7_METVS2.985e-3845.0330S ribosomal protein S7P OS=Methanococcus vanniel... [more]
RS7_METTP5.091e-3841.2730S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_METMA5.091e-3841.4930S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METAC6.650e-3841.4930S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_HALSA6.650e-3843.2830S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_HALMA6.650e-3842.7230S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_METBF8.685e-3841.8030S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_METHJ2.527e-3742.7830S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_METBU2.527e-3740.9630S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_METB65.629e-3740.8930S ribosomal protein S7P OS=Methanoregula boonei ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257956 ID=DY257956; Name=DY257956; organism=Citrus clementina; type=EST; length=1028bp
GGTCTCCCAACACTCAGAAGAGAACTCAGCGAGCGGCTGCCGATTCTTAT
TATTCCTTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCTTTTTC
TTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCATTTTTAGTTCGA
AAAACATTGTCTTTTAATATTTTGTTGTGTAGGAATGGCGACTGCTGTAG
TGGCACAATCTCAAGACCCATCACAGCCTCAATACGATGTGAAGCTCTTC
AATAGGTGGACTTTTGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGA
TTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTG
CTGGGAGGTACTCAGCTAAGCGCTTTCGGAAGGCCCAATGTCCCATTGTT
GAGAGGCTTACGAACTCTCTAATGATGCACGGTCGTAACAATGGCAAGAA
ATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAAATCATTCACCTTT
TGACTGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGT
GGTCCAAGGGAAGATGCTACCCGCATTGGATCTGCTGGCGTTGTTAGGCG
TCAGGCTGTTGATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATT
TGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATGTCAAGACTATT
GCGGAATGTTTGGCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAA
CAGCTATGCCATCAAGAAGAAGGATGAGATCGAGCGAGTTGCTAAGGCCA
ATCGCTGAACTTTGGACAATGTTTTGTTTTTTATTTTTATTTTCTCAAAC
TTTGGACAATGTTTTGTCTCTATTTTTGGCGGATATTTATTATGATCATT
TATTACTTTAAAATAGATAAAGGTAAAAAGTTTATTGGGCNANNNNNAAN
GAANAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGAAAAAGAAAAAA
AAAGGAGAAAGGGANAAGAAAGGGGTTT
back to top