DY257956

Overview
NameDY257956
Unique NameDY257956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.794e-36
Identity = 87/206 (42.23%), Postives = 121/206 (58.74%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKKEEIERIAQSSR 215          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 8.128e-36
Identity = 79/187 (42.25%), Postives = 124/187 (66.31%), Query Frame = 2
Query:  245 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            LF+++    V+V+D  +  YI V++A +     HT GR+S+    K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AAK  ++S+AI KK+EIERVA++ R
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.062e-35
Identity = 88/210 (41.90%), Postives = 123/210 (58.57%), Query Frame = 2
Query:  224 QPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            QP+ ++K+  RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   11 QPK-ELKVMGRWSVEDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.387e-35
Identity = 86/196 (43.88%), Postives = 123/196 (62.76%), Query Frame = 2
Query:  245 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            LF +W   D++V D  L   I ++       +P+T GR + KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AFR  K++ E LA+ LI AA  ++++ ++KKK+E+ER+A+A+R
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEEFLAEHLILAANNTTDAPSVKKKNELERIAQASR 199          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.811e-35
Identity = 87/206 (42.23%), Postives = 118/206 (57.28%), Query Frame = 2
Query:  236 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +VK+  RW+ EDV V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   14 EVKVMGRWSVEDVTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.365e-35
Identity = 77/187 (41.18%), Postives = 122/187 (65.24%), Query Frame = 2
Query:  245 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            LFN++    V+++D  +  YI V++A +     HT GR+S+    K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  CLADE++ AA+    S+AI KK+EIERVA++ R
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.269e-35
Identity = 86/210 (40.95%), Postives = 122/210 (58.10%), Query Frame = 2
Query:  224 QPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            QP+ ++K+  RW+ EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A  +K+EIER+A+++R
Sbjct:   11 QPK-ELKVMGRWSVEDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.987e-35
Identity = 85/207 (41.06%), Postives = 120/207 (57.97%), Query Frame = 2
Query:  233 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   13 HEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.002e-34
Identity = 75/189 (39.68%), Postives = 117/189 (61.90%), Query Frame = 2
Query:  239 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            + LFN+W   +V V D  +  Y+ + +    T VP + GR + ++F K++  IVERL N LM    N GKK+M  ++V  A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+  +     + + +  K     LADELI AAKG +  +++ KK+E+ER+AK+ R
Sbjct:   10 ILLFNKWDMSEVVVKDAGMVRYVTITS----TEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTALRYIALATWKGSHKTKKPAYLVLADELIMAAKGDAKCFSVGKKEEVERIAKSAR 194          
BLAST of DY257956 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.002e-34
Identity = 81/206 (39.32%), Postives = 122/206 (59.22%), Query Frame = 2
Query:  203 AQSQDPSQPQ-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 805
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F++     E LA++L  AA     +YA+ +K+E ERVA A R
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYDVQTYAVNQKEEKERVAAAAR 203          
The following BLAST results are available for this feature:
BLAST of DY257956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS7_THEGJ2.794e-3642.2330S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_THEVO8.128e-3642.2530S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_THEON1.062e-3541.9030S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_CENSY1.387e-3543.8830S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_PYRKO1.811e-3542.2330S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_THEAC2.365e-3541.1830S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THECE5.269e-3540.9530S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_PYRFU8.987e-3541.0630S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_METLZ2.002e-3439.6830S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_HALMO2.002e-3439.3230S ribosomal protein S7P OS=Halococcus morrhuae G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257956 ID=DY257956; Name=DY257956; organism=Citrus clementina; type=EST; length=1028bp
GGTCTCCCAACACTCAGAAGAGAACTCAGCGAGCGGCTGCCGATTCTTAT
TATTCCTTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCTTTTTC
TTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCATTTTTAGTTCGA
AAAACATTGTCTTTTAATATTTTGTTGTGTAGGAATGGCGACTGCTGTAG
TGGCACAATCTCAAGACCCATCACAGCCTCAATACGATGTGAAGCTCTTC
AATAGGTGGACTTTTGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGA
TTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTG
CTGGGAGGTACTCAGCTAAGCGCTTTCGGAAGGCCCAATGTCCCATTGTT
GAGAGGCTTACGAACTCTCTAATGATGCACGGTCGTAACAATGGCAAGAA
ATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAAATCATTCACCTTT
TGACTGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGT
GGTCCAAGGGAAGATGCTACCCGCATTGGATCTGCTGGCGTTGTTAGGCG
TCAGGCTGTTGATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATT
TGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATGTCAAGACTATT
GCGGAATGTTTGGCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAA
CAGCTATGCCATCAAGAAGAAGGATGAGATCGAGCGAGTTGCTAAGGCCA
ATCGCTGAACTTTGGACAATGTTTTGTTTTTTATTTTTATTTTCTCAAAC
TTTGGACAATGTTTTGTCTCTATTTTTGGCGGATATTTATTATGATCATT
TATTACTTTAAAATAGATAAAGGTAAAAAGTTTATTGGGCNANNNNNAAN
GAANAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGAAAAAGAAAAAA
AAAGGAGAAAGGGANAAGAAAGGGGTTT
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