DY257957

Overview
NameDY257957
Unique NameDY257957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9828 contig Ccv1_Contig9828:4..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257957 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T I +TD +G        GG   K  R +S+P+AA +AA+D +++ ++ G+ ++ + ++              +SALRAL  +G  +  I DVTPIP
Sbjct:   21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119          
BLAST of DY257957 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117          
BLAST of DY257957 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of DY257957 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of DY257957 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of DY257957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_GEOMG9.252e-1136.1130S ribosomal protein S11 OS=Geobacter metalliredu... [more]
RS11_AZOVD9.252e-1137.2730S ribosomal protein S11 OS=Azotobacter vinelandi... [more]
RS11_ACTPJ9.252e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP79.252e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP29.252e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BE02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257957 ID=DY257957; Name=DY257957; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
back to top