DY257959

Overview
NameDY257959
Unique NameDY257959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:405..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.806e-41
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 314
            GAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:  117 GAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 311
            GAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  117 GAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 311
            GAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  117 GAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 275
            GAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:  117 GAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of DY257959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL103_ARATH2.806e-4177.8860S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ORYSJ1.393e-4076.7060S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI1.393e-4076.7060S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10L_MACFA9.690e-2660.0060S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_SHEEP2.159e-2560.0060S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG2.159e-2560.0060S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN2.159e-2560.0060S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_DROME2.819e-2561.5460S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_RAT3.682e-2560.0060S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN3.682e-2560.0060S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257959 ID=DY257959; Name=DY257959; organism=Citrus clementina; type=EST; length=493bp
GGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGG
CAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCA
GGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTA
TTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTG
AGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCT
TCTCGGATGTCATGGTCCTTTGGCTCAACGCCAACCTGGAAGAGCTTTCC
TGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGTGA
CTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAGCT
GGATTTCTCAAGTTGAAGTGACATGTTTATTTGGTTTAACTATGTGATCC
TTGCAGTTGTCTTAGTGAATTTGCAATTTGCACTCTTCTATAT
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