DY257959

Overview
NameDY257959
Unique NameDY257959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:405..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.281e-25
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 278
            GA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL +
Sbjct:  117 GAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 8.203e-25
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 8.203e-25
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.827e-24
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:  112 GAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.387e-24
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.071e-24
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 278
            GAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:  117 GAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.071e-24
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:  117 GAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
The following BLAST results are available for this feature:
BLAST of DY257959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10_MOUSE3.682e-2560.0060S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA3.682e-2560.0060S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN3.682e-2560.0060S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_CAEEL6.281e-2559.7860S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_PONAB8.203e-2560.0060S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10L_HUMAN8.203e-2558.8960S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK1.827e-2457.7860S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10L_BOVIN2.387e-2458.8960S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10_DICDI4.071e-2454.3560S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_MOUSE4.071e-2458.8960S ribosomal protein L10-like OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257959 ID=DY257959; Name=DY257959; organism=Citrus clementina; type=EST; length=493bp
GGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGG
CAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCA
GGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTA
TTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTG
AGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCT
TCTCGGATGTCATGGTCCTTTGGCTCAACGCCAACCTGGAAGAGCTTTCC
TGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGTGA
CTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAGCT
GGATTTCTCAAGTTGAAGTGACATGTTTATTTGGTTTAACTATGTGATCC
TTGCAGTTGTCTTAGTGAATTTGCAATTTGCACTCTTCTATAT
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