DY257959

Overview
NameDY257959
Unique NameDY257959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:405..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.879e-23
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 3
Query:    6 AFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 281
            AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  118 AFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 3
Query:    6 AFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 281
            AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  118 AFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:  117 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.091e-20
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 272
            GA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:  117 GAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 296
            GAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:  117 GAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
BLAST of DY257959 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:    3 GAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 236
            G+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:  117 GSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
The following BLAST results are available for this feature:
BLAST of DY257959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10B_SCHPO5.879e-2355.4360S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO7.678e-2354.3560S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_BOMMA2.918e-2257.7860S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST2.091e-2052.2260S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR2.826e-1745.9260S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU7.203e-1350.0060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257959 ID=DY257959; Name=DY257959; organism=Citrus clementina; type=EST; length=493bp
GGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGG
CAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCA
GGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTA
TTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTG
AGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCT
TCTCGGATGTCATGGTCCTTTGGCTCAACGCCAACCTGGAAGAGCTTTCC
TGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGTGA
CTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAGCT
GGATTTCTCAAGTTGAAGTGACATGTTTATTTGGTTTAACTATGTGATCC
TTGCAGTTGTCTTAGTGAATTTGCAATTTGCACTCTTCTATAT
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