DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.043e-18
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+GD+RSSIFDAKAGIAL+   VKLVSWY+NEWGYS+RVVDLIVHM+KTQ
Sbjct:  289 FIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKT 148
            F+GDSRSSIFDAKAGIAL+  FVKLVSWY+NEWGYS+RV+DLIVHM  T
Sbjct:  291 FIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+GDSRSSIFDAKAGIAL+  FVKLVSWY+NEWGYS RVVDLI HM KTQ
Sbjct:  288 FLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+GD+RSSIFDAKAGI+L+  FVKLVSWY+NEWGYSTRVVDLI+H++K Q
Sbjct:  288 FIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKT 148
            FVGD+RSSIFDAKAGIAL+  F+KLVSWY+NEWGYSTRVVDLI H+ KT
Sbjct:  288 FVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.436e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F GDSRSSIFDAKAGIAL+  F+KLVSWY+NEWGYS RVVDLI HM KTQ
Sbjct:  288 FTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.488e-17
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+ DSRSSIFDAKAGIALS  FVKLV+WY+NEWGYS RVVDLIVHMAK
Sbjct:  290 FITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+RSSIFDAKAGIAL+ KFVKLVSWY+NE GYSTRVVDLIVH+AK
Sbjct:  289 FIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.655e-17
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKT 148
            FVGD+RSSIFDAKAGI L+  FVKLVSWY+NEWGYS+RVVDLI HM+KT
Sbjct:  288 FVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.998e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F GDSRSSIFDAKAGIAL+  FVKLVSWY+NEWGYSTRVVDLI HM  T+
Sbjct:  256 FQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3PC_RANAC9.043e-1882.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA2.015e-1781.63Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE2.015e-1784.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR2.631e-1778.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA2.631e-1781.63Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE3.436e-1782.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA4.488e-1785.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA5.861e-1785.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU7.655e-1781.63Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_HORVU9.998e-1782.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
back to top