DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:123..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.306e-16
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F GDSRSSIFDAKAGIAL+  FVKLVSWY+NEWGYSTRVVDLI HM  T+
Sbjct:  288 FQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.705e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+GD+RSSIFDAKAGIALSK FVKLVSWY+NE GYSTRVVDLI H+A  +
Sbjct:  288 FIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            FVGDSRSSIFDAKAGIAL+  FVK+VSWY+NEWGYS RV+DLI HMA
Sbjct:  287 FVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVD--LIVHMAKTQ 151
            F+GD+RSSIFDAKAGIAL++ FVKLVSWY+NEWGYS+RV+D  LIVHMA  Q
Sbjct:  290 FIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GDS SSIFDAKAGI+L+  FVKL+SWY+NE+GYSTRVVDL+VH+AK
Sbjct:  284 FIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GDSRSSIFDA AGI LS KFVKLVSWY+NE+GYSTRVVDL+ H+AK
Sbjct:  284 FLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+GDS SSIFDA+AGIAL+  FVKLVSWY+NEWGYS+RV+DLI HM K +
Sbjct:  283 FIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GDS SSIFDA AGI LS KFVKLVSWY+NE+GYSTRVVDL+ H+AK
Sbjct:  284 FLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGI+L+K FVKLVSWY+NEWGYS RV+DL+V++AK
Sbjct:  287 GDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGI+L+K FVKLVSWY+NEWGYS RV+DL+V++AK
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3PE_MAIZE1.306e-1682.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY1.705e-1680.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR2.909e-1682.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.909e-1676.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI6.481e-1677.08Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P2_CANGA6.481e-1681.25Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_PHYIN8.464e-1674.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P3_YEAST2.463e-1579.17Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P_PHANO3.216e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU3.216e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
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