DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:123..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGI+L+K FVKLVSWY+NEWGYS RV+DL+V++AK
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GDS SSIFDA AGI LS KFVKLVSWY+NE+GYSTRVVDL+ H+AK
Sbjct:  284 FLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F GDSRSSIFDA AGIAL+  FVKLVSWY+NE+GYS RVVDL+VHMA  +
Sbjct:  284 FNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+RSSIFDAKAGI LSK FVK+VSWY+NE+GYS RV+DL+ HM K
Sbjct:  282 FIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F GD+RSSIFDAKAGI LSK FVK+VSWY+NE+GYS RV+DLI HM K
Sbjct:  282 FTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVH 136
            FVG+  SSIFDAKAGIAL K FVKLVSWY+NEWGYS RVVDL++H
Sbjct:  290 FVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGIAL+  F+KLVSWY+NEWGYS RVVDLI +++K
Sbjct:  287 GDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            +GD+ SSIFDAKAGIAL++ F+KLVSWY+NEWGYS RVVDLI +++K
Sbjct:  288 IGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F+GD+ SSIFDA AGI LS KFVKLVSWY+NE+GYSTRVVDL+ H+A
Sbjct:  283 FLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GDSRSSIFDA AGIAL+  F+KL+SWY+NEWGYS RVVDLI ++AK
Sbjct:  287 GDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3P_COCHE3.216e-1578.26Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P2_YEAST3.216e-1579.17Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_TRISI7.165e-1576.00Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_HOMAM7.165e-1575.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PANVR9.358e-1577.08Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_MASBA9.358e-1580.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_EMENI1.222e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_ASPOR2.085e-1472.34Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASHGO2.085e-1476.60Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_AJECA2.085e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
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