DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:123..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD RSSIFDA AGI L+  FVKL+SWY+NE+GYSTRVVDL+ H+AK
Sbjct:  285 FLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+ DSRSS+FDAKAGI L+  FVKLVSWY+NE+GYSTRVVDL+ H+AK
Sbjct:  285 FLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.644e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD  SSIFDAKAGIAL+  FVKLVSWY+NEWGYS RVVDLI +++K
Sbjct:  287 GDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDAKAGI L+  FVKL+SWY+NE+GYS RVVDLIV +AK
Sbjct:  286 FIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            GD RSSIFDA AGIAL+ +FVKL+SWY+NEWGYS RV+DLI ++AK
Sbjct:  288 GDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI L+K FVKL++WY+NEWGYS RVVDL+V  AK
Sbjct:  285 FIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            FVGD++SSIFDA AGIAL+ KFVKLVSWY+NE+GYS RV+DL+ + AK
Sbjct:  285 FVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            FVG + SSIFDAKAGI+L+  FVKLVSWY+NE+GYS RVVDLI HM K
Sbjct:  287 FVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGIAL+  FVKLVSWY+NE GYSTRV+DL+V+++K
Sbjct:  286 FIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            +G+  SSIFDAKAGI+L+  FVKLVSWY+NEWGYS RV+DL+ H+AK
Sbjct:  286 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3P_PICPA2.723e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICAN2.723e-1475.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ASPNG4.644e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_YARLI6.066e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PARBA6.066e-1473.91Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LENED6.066e-1470.83Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P2_RHIRA6.066e-1472.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_SCHMA7.922e-1475.00Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_DICDI7.922e-1470.83Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_COLLN7.922e-1470.21Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
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