DY257965

Overview
NameDY257965
Unique NameDY257965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length981
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9831 contig Ccv1_Contig9831:4..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257965 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.817e-30
Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    4 WKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICR 459
            W+G+L QLWP A+YI  V TG+M QY P+++++    LP++GT Y +SEC  G+NL+  S P + ++ LLP   YFEF+P + +                  + VD+  V AG  YELV TTF GL RY++GDV+++ GF++ +P+  F+ R
Sbjct:  126 WRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGINLERTSPPEETTYVLLPRAAYFEFIPFDMDAA---------GRGAAAAEPVDIAGVEAGKTYELVATTFRGLYRYKVGDVVKIAGFHHSSPRLQFVTR 268          
BLAST of DY257965 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.823e-22
Identity = 60/156 (38.46%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLE---GENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICR 459
            +W G++  LWP A+Y+  ++TGSM  Y+  L +Y AG LPLV   Y +SE + G N++P + P   +FT+LP++ YFEF+PL+   G+ G      + E E       V L  V AG  YE+V+TTFAG  R     +  V  +Y ++ +++ ICR
Sbjct:  292 NWYGVIPALWPNARYVYGIMTGSMEHYVKKLRHY-AGGLPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFIPLKPVAGDGG------YAEAEP------VGLTEVAAGELYEVVMTTFAGNTRSSSSCMTLVAYYYLQSKKWMNICR 434          
BLAST of DY257965 vs. ExPASy Swiss-Prot
Match: GHDC_HUMAN (GH3 domain-containing protein OS=Homo sapiens GN=GHDC PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.649e-12
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    7 KGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSI 480
            +G+  +LWP+ + +  +  G  A+ + +L       L      YA+S    G+NL+P   P    + L P   + E LP++   GT        +EE  +  L  L   + G  YELV+T  A L R R+GDV++V G YN+ P   FICR +  LS+
Sbjct:  249 RGLALRLWPKLQVVVTLDAGGQAEAVAALGALWCQGLAFFSPAYAASGGVLGLNLQP-EQPHGL-YLLPPGAPFIELLPVK--EGT--------QEEAASTLL--LAEAQQGKEYELVLTDRASLTRCRLGDVVRVVGAYNQCPVVRFICRLDQTLSV 392          
BLAST of DY257965 vs. ExPASy Swiss-Prot
Match: GHDC_MOUSE (GH3 domain-containing protein OS=Mus musculus GN=Ghdc PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 48/165 (29.09%), Postives = 75/165 (45.45%), Query Frame = 1
Query:    7 KGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE 501
            +G+  +LWP+ + +  + +G  A+ + +L       L      YA+S     +NL P       S+ L P + + E LP++         E  +EE      L D    +    YELV+T    L R R+GDV+QV G YN+ P   F CR    L++  + T E
Sbjct:  250 RGLARRLWPKLQVVVTLDSGGQAEAVAALRVLWCQGLAFFSPAYAASGGVVALNLWP--ERPQGSYLLPPGVPFIELLPIK---------EGTQEEAASTLLLTDAQREKE---YELVLTNHTSLTRCRLGDVVQVVGTYNQCPVVRFTCRLGQTLNVRGEVTDE 400          
The following BLAST results are available for this feature:
BLAST of DY257965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH36_ORYSJ2.817e-3040.79Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ2.823e-2238.46Probable indole-3-acetic acid-amido synthetase GH3... [more]
GHDC_HUMAN2.649e-1232.28GH3 domain-containing protein OS=Homo sapiens GN=G... [more]
GHDC_MOUSE4.995e-1129.09GH3 domain-containing protein OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BF02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257965 ID=DY257965; Name=DY257965; organism=Citrus clementina; type=EST; length=981bp
TCATGGAAAGGAATCTTGTGTCAACTTTGGCCTAGGGCTAAGTACATTGA
GGCTGTAGTCACTGGCTCTATGGCACAATATATACCATCCCTGGAGTATT
ATATTGCAGGGAAGTTGCCCTTGGTGGGCACCATGTATGCTTCATCTGAG
TGTTACTTCGGTGTAAATTTGAAACCCTTGAGTAATCCTGCTGACTTCTC
GTTTACCCTCTTGCCTAACATGTGTTATTTTGAATTTTTGCCATTGGAAG
GTGAGAATGGCACGCTGTTTTCAATAGAATTTAATGAAGAAGAGGAGGTG
CCAAACGATAAGCTTGTTGATTTGGGGCATGTTAGAGCCGGCCATTACTA
TGAATTGGTTGTCACCACTTTTGCCGGGCTGAATCGATATCGAATTGGCG
ATGTACTCCAAGTGACTGGATTCTACAATCGGGCGCCACAATTTCTATTC
ATATGCAGGAGAAATGTTGTTTTGAGCATAGACTATGACAAAACCCACGA
ATAAGATTTGCACAAAAGCGTGACTATTGCTAAAAACTTATTAGAACCTT
ACAGTGCGCTACTTGTACAATACACAACCTATGCTGATACATCCACTGTG
CCCGGCCACTATGTATTATACTGGGAGATTCAAATAGTGGACTCGCCAGC
ACTCCCACTTGATCATCAGAAGGTACTTGAAGAATGTTGCATTGCTGTCG
AATAACAACTTGATTATGTGTACAGGCGCTGCCCTTCTCATAATAAATCA
GTTGAACGCTCAAGAAACGAGTTGTCAAACCTGCCACCTTTGAAACCCTG
AAGATTTGCCTTGTTACCCAAGGCGTATCCTTAAACAATAAAAAACCCCA
AGCTTGCCTCAAACCAAAAAAGGTTCCCCTTATTTGCTTTTTTCCCTTGA
AAGGGAATTTTTTTTTTCCCCAAGGATCCCAAAAGTGTTCCCTTAATTTT
ATTTTAAAAAGGGAATTCGATTTTTCTTTTC
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