DY257990

Overview
NameDY257990
Unique NameDY257990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257990_ssr642 microsatellite DY257990_ssr642:642..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:8..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.815e-67
Identity = 130/205 (63.41%), Postives = 144/205 (70.24%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+LVD  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_MEGAM (60S ribosomal protein L15 OS=Megalobrama amblycephala GN=rpl15 PE=2 SV=3)

HSP 1 Score: 255.758 bits (652), Expect = 2.370e-67
Identity = 130/205 (63.41%), Postives = 144/205 (70.24%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ +LWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:    1 MGAYKYMQKLWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_SILAS (60S ribosomal protein L15 OS=Silurus asotus GN=rpl15 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 4.043e-67
Identity = 129/205 (62.93%), Postives = 144/205 (70.24%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  R TRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +S+AEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P + WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRATRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_SILME (60S ribosomal protein L15 OS=Silurus meridionalis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 5.280e-67
Identity = 129/205 (62.93%), Postives = 144/205 (70.24%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGA KY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +S+AEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P + WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:    1 MGASKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_SINKN (60S ribosomal protein L15 OS=Siniperca kneri GN=rpl15 PE=2 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 6.896e-67
Identity = 128/205 (62.44%), Postives = 143/205 (69.76%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAY+Y+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H A+R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL LRRYR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLRRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_MONAL (60S ribosomal protein L15 OS=Monopterus albus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 6.896e-67
Identity = 129/205 (62.93%), Postives = 143/205 (69.76%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAY+Y+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_HYPMO (60S ribosomal protein L15 OS=Hypophthalmichthys molitrix GN=rpl15 PE=2 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 6.896e-67
Identity = 130/205 (63.41%), Postives = 143/205 (69.76%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K V KHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVRKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_ANGJA (60S ribosomal protein L15 OS=Anguilla japonica GN=rpl15 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 9.006e-67
Identity = 128/205 (62.44%), Postives = 141/205 (68.78%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ   + R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H A+R DP   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSGLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRDPDAQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 1.176e-66
Identity = 129/205 (62.93%), Postives = 143/205 (69.76%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  +PTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  GGL+VL+SYW+ EDSTYK+FEVILVD  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRTPKPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVILVDIFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204
[Close]
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_EPICO (60S ribosomal protein L15 OS=Epinephelus coioides GN=rpl15 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.176e-66
Identity = 129/205 (62.93%), Postives = 142/205 (69.27%), Query Frame = 2 
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            MGAY+Y+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G L+VLNSYW+ EDSTYK+FEVILVD  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204
The following BLAST results are available for this feature:
BLAST of DY257990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CARAU1.815e-6763.4160S ribosomal protein L15 OS=Carassius auratus GN=... [more]
RL15_MEGAM2.370e-6763.4160S ribosomal protein L15 OS=Megalobrama amblyceph... [more]
RL15_SILAS4.043e-6762.9360S ribosomal protein L15 OS=Silurus asotus GN=rpl... [more]
RL15_SILME5.280e-6762.9360S ribosomal protein L15 OS=Silurus meridionalis ... [more]
RL15_SINKN6.896e-6762.4460S ribosomal protein L15 OS=Siniperca kneri GN=rp... [more]
RL15_MONAL6.896e-6762.9360S ribosomal protein L15 OS=Monopterus albus GN=r... [more]
RL15_HYPMO6.896e-6763.4160S ribosomal protein L15 OS=Hypophthalmichthys mo... [more]
RL15_ANGJA9.006e-6762.4460S ribosomal protein L15 OS=Anguilla japonica GN=... [more]
RL15_PARDA1.176e-6662.9360S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_EPICO1.176e-6662.9360S ribosomal protein L15 OS=Epinephelus coioides ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257990 ID=DY257990; Name=DY257990; organism=Citrus clementina; type=EST; length=866bp
GCTCAGCCAAAACTCTTATCATCACAGCACAGGTGAGCTCGACGATCGAA
CAATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCG
GATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCA
CCCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCC
GCTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTA
AGACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAA
ACCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTT
CAGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTC
AACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAAT
CCTGGTGGATGCTGCCCACAATGCTATCCGCAATGACCCCAGGATCAACT
GGATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCT
GCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAA
GGCACGACCTTCAAGAAGGGCAACCTGGAAGAGGAACCAAACTCTCTCTC
TCAGGCGTTACCGTTAAACTTCTGTATTGTTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTGAACTCCGAAACAAGTGTTT
TGGGTTAGTTTTTGCTGCAACATGGTTAATTTTGTTTCATTTGGGCAATT
GAATTTTGTATTTCCTATGGATTGTTTTATCCGATAAATACCTTCTATAT
TTGTGGGATTCATTCC
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