DY257990

Overview
NameDY257990
Unique NameDY257990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257990_ssr642 microsatellite DY257990_ssr642:642..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:8..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.659e-50
Identity = 101/165 (61.21%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  173 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H  IR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 165          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.071e-43
Identity = 90/154 (58.44%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  206 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 664
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 153          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.213e-40
Identity = 96/204 (47.06%), Postives = 114/204 (55.88%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 664
            MGAYKYV+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                       +GKP NQG+ QLKFQRS RS AEER  R+ GGL++LNSYWI +  +    +  L   +       P       P      L      GK+ RGL G+G  H K+     A WKR   L LRRYR
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGL-GRGSKHTKS--PNHAFWKRTNKLFLRRYR 201          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.385e-40
Identity = 86/196 (43.88%), Postives = 116/196 (59.18%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            MG YKY+ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   ++VLNSYW+ ED  +K++EVILVD  H AI+ DP++NW+C   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R +
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRAHGRRGK 194          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.019e-38
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 634
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRANSKK 192          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.019e-38
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 634
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRANSKK 192          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.019e-38
Identity = 83/196 (42.35%), Postives = 112/196 (57.14%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   ++VLNSYW+ +D   K++EVILVD    +I+ND   NW+CK  HK R  RGLTSAGKK RGL  KG    KARPS RA  K+ +
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRANGKKTK 194          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 622
            MG YKY+ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 622
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 622
            MG YKY+ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
The following BLAST results are available for this feature:
BLAST of DY257990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK7.659e-5061.2160S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG4.071e-4358.4460S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15_QUESU4.213e-4047.0660S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_METJA9.385e-4043.8850S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_METM73.019e-3843.3050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM63.019e-3843.3050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM53.019e-3842.3550S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_THEON1.498e-3744.2150S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ1.498e-3744.2150S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_PYRHO1.498e-3744.7450S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257990 ID=DY257990; Name=DY257990; organism=Citrus clementina; type=EST; length=866bp
GCTCAGCCAAAACTCTTATCATCACAGCACAGGTGAGCTCGACGATCGAA
CAATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCG
GATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCA
CCCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCC
GCTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTA
AGACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAA
ACCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTT
CAGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTC
AACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAAT
CCTGGTGGATGCTGCCCACAATGCTATCCGCAATGACCCCAGGATCAACT
GGATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCT
GCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAA
GGCACGACCTTCAAGAAGGGCAACCTGGAAGAGGAACCAAACTCTCTCTC
TCAGGCGTTACCGTTAAACTTCTGTATTGTTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTGAACTCCGAAACAAGTGTTT
TGGGTTAGTTTTTGCTGCAACATGGTTAATTTTGTTTCATTTGGGCAATT
GAATTTTGTATTTCCTATGGATTGTTTTATCCGATAAATACCTTCTATAT
TTGTGGGATTCATTCC
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