DY257990

Overview
NameDY257990
Unique NameDY257990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257990_ssr642 microsatellite DY257990_ssr642:642..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:8..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.451e-32
Identity = 84/196 (42.86%), Postives = 108/196 (55.10%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 634
            T   Y YV + W+      ++ L   R  ++R+  SIVRV RPTR D+AR LGYKAKQ                      V G+ T   GV +    +S + +AEERA RK   ++VLNSYW+ ED   K++EVIL+D  H +I ND  +NWI KP H+ R  RGLTSAG K RG+R +G    K RPS RA   R
Sbjct:    2 TKSMYAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRGKGTEKCRPSVRANANR 194          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.233e-32
Identity = 77/193 (39.90%), Postives = 105/193 (54.40%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 631
            M  YK+V E W+K     ++ LQ  R  ++R+ P++VRV +PTR D+AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L+VLNSY + ED   K++EVIL+D  H +I+ND     +C   H +R  RGLTSAGKK RGL  KG    K RP  RA  K
Sbjct:    1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRANKK 191          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.233e-32
Identity = 80/195 (41.03%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQT 643
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN++
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.233e-32
Identity = 80/195 (41.03%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQT 643
            Y ++ E W       +  LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN++
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 77/193 (39.90%), Postives = 107/193 (55.44%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            Y ++ E W+  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   L+VLNSYW+ ED + K+FEVIL+D  H AI+ND  ++WIC    + R  RG TSAG++ RG + +G      RPS RA  KR +
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRANDKRGK 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 77/193 (39.90%), Postives = 103/193 (53.37%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            Y ++ E W++     +  LQ  R  E+R   +IVR+ RPTR DKAR LGYKAKQ                         K   QGV +L  + S + +AEERA RK   L+ L SYW+ ED + K+ E+IL+D  H AI ND  +NWIC   HK R  RGLT+AG+  RGL+ +G      RPS  +  +R +
Sbjct:    6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHTRPSAGSGSRRGK 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 613
            Y ++ E WR  +   +  LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   L+VLNSYW+ ED + K+ EVILVD  H AI ND  + WI    HK R  RGLTSAG K RG R +G    K RPS
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 76/193 (39.38%), Postives = 111/193 (57.51%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            Y Y+ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+                         K     V +   +++ + +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG    K RPS RA +++ +
Sbjct:    5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKR 193          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 74/194 (38.14%), Postives = 107/194 (55.15%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            Y Y+ + W+      +R L+  R   +R+  S+ RV RPTR D+AR LGYKAKQ                      + G+ T   G  ++   +S + ++EERA RK   ++VLNSYW+ ED   K++EVILVD +H  I++D  +NWIC   H  R  RG TSAG+K RG++ +G    K RPS R+   R++
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKTRPSVRSNLNRSK 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 76/193 (39.38%), Postives = 103/193 (53.37%), Query Frame = 2
Query:   62 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            Y YV E W++     ++ L   R   +R+  SIVRV  PTR D+AR LGYKAKQ                         +    G+ +L   +S + +AEERA RK   ++ LNSYW+ ED   K+FEVILVD  H +I++D  + W+  PVH+ R  RG TSAG K RG+R +G    K RPS R+   R +
Sbjct:    6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKTRPSIRSHANRGK 196          
The following BLAST results are available for this feature:
BLAST of DY257990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METHJ1.451e-3242.8650S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_META33.233e-3239.9050S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_HALSA3.233e-3241.0350S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS33.233e-3241.0350S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_NATPD1.604e-3139.9050S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_HALWD1.604e-3139.9050S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_HALLT1.604e-3143.4850S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_ARCFU1.604e-3139.3850S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_METBU3.574e-3138.1450S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_METMJ3.026e-3039.3850S ribosomal protein L15e OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257990 ID=DY257990; Name=DY257990; organism=Citrus clementina; type=EST; length=866bp
GCTCAGCCAAAACTCTTATCATCACAGCACAGGTGAGCTCGACGATCGAA
CAATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCG
GATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCA
CCCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCC
GCTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTA
AGACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAA
ACCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTT
CAGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTC
AACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAAT
CCTGGTGGATGCTGCCCACAATGCTATCCGCAATGACCCCAGGATCAACT
GGATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCT
GCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAA
GGCACGACCTTCAAGAAGGGCAACCTGGAAGAGGAACCAAACTCTCTCTC
TCAGGCGTTACCGTTAAACTTCTGTATTGTTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTGAACTCCGAAACAAGTGTTT
TGGGTTAGTTTTTGCTGCAACATGGTTAATTTTGTTTCATTTGGGCAATT
GAATTTTGTATTTCCTATGGATTGTTTTATCCGATAAATACCTTCTATAT
TTGTGGGATTCATTCC
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