DY257990

Overview
NameDY257990
Unique NameDY257990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257990_ssr642 microsatellite DY257990_ssr642:642..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:8..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30
Identity = 80/209 (38.28%), Postives = 113/209 (54.07%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQTLSLRRYR 664
            T+  Y Y+ + W+ K  D  R + R R  E+R+ P+I R+ RPTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+EVI+VD +H  IR+DP + W+   V++ R  RGLTSAG+K RGL   RG KG +  K +  ++    + +  + R YR
Sbjct:    2 TLSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQRKWKKKQKERQLKRRHEATRYYR 206          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.804e-30
Identity = 79/190 (41.58%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   56 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 622
            G Y+ V E W+  +   +  L + R  E+R  PSIVR+  PTR D+AR LG+K+K                      I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKYFEVILVD +H  I NDP I+WI +P +  R  RGLTSAG K RGLR       K+RPS R+
Sbjct:    5 GLYQAVREEWKSLKKSEIYDLVKKRMIEWRHGPSIVRLEHPTRIDRARALGFKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRS 191          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.502e-29
Identity = 74/194 (38.14%), Postives = 106/194 (54.64%), Query Frame = 2
Query:   59 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 640
            AY Y+ + W+      +  L   R  E+R+ P++V++ RPTR D+AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   ++VLNSYW+ +D  +K++E+ILVD  H +I +D  ++WI K  H+ R  RGLTSAGKK RG R KG    K  PS +A  +R +
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRRGK 196          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIY (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIN (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.961e-29
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 640
            T+  Y Y+   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:    2 TLSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.562e-29
Identity = 75/209 (35.89%), Postives = 112/209 (53.59%), Query Frame = 2
Query:   50 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQTLSLRRYR 664
            T   Y Y+ + W   QSD  + + R R  E+R+ P++ R+ +PTR ++AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L+VL SY++ ED  YKY+E+I+VD  H  I++DP + W+  P ++ R  RGLTSAGKK RGL   RG KG + HK +   +   ++ +  + + YR
Sbjct:    2 TSSMYNYIEQTW---QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKHKWKKKEKEREQKKRHEATKYYR 205          
The following BLAST results are available for this feature:
BLAST of DY257990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_SULAC5.161e-3038.2850S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_THEAC8.804e-3041.5850S ribosomal protein L15e OS=Thermoplasma acidoph... [more]
RL15E_UNCMA1.502e-2938.1450S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_SULIY1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIN1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIM1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA1.961e-2938.3150S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULTO2.562e-2935.8950S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257990 ID=DY257990; Name=DY257990; organism=Citrus clementina; type=EST; length=866bp
GCTCAGCCAAAACTCTTATCATCACAGCACAGGTGAGCTCGACGATCGAA
CAATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCG
GATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCA
CCCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCC
GCTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTA
AGACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAA
ACCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTT
CAGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTC
AACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAAT
CCTGGTGGATGCTGCCCACAATGCTATCCGCAATGACCCCAGGATCAACT
GGATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCT
GCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAA
GGCACGACCTTCAAGAAGGGCAACCTGGAAGAGGAACCAAACTCTCTCTC
TCAGGCGTTACCGTTAAACTTCTGTATTGTTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTGAACTCCGAAACAAGTGTTT
TGGGTTAGTTTTTGCTGCAACATGGTTAATTTTGTTTCATTTGGGCAATT
GAATTTTGTATTTCCTATGGATTGTTTTATCCGATAAATACCTTCTATAT
TTGTGGGATTCATTCC
back to top