DY257990

Overview
NameDY257990
Unique NameDY257990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257990_ssr642 microsatellite DY257990_ssr642:642..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:8..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.042e-22
Identity = 68/169 (40.24%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   59 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWIC-KPVHKHRELRGLTSAGKK 562
            AY Y++  +RK   +V   L R    E+R+ P+IVRV RP R ++AR+LGYKAKQ                         +P   GV  +   +S R VAEERA RK   L+VLNSYW+ +D  Y+YFEVIL+D     I+NDP  + IC + V + R +R L    KK
Sbjct:    5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDS--GRRPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKK 171          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   53 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 223
            MGAY+Y+ ELWRKK+S+ MR+L R+RCW+YRQ  +I RV+RPTRP+KARRLGY + +
Sbjct:    1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57          
BLAST of DY257990 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.665e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  107 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 223
            MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41          

HSP 2 Score: 21.1718 bits (43), Expect = 3.665e-14
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  279 PRVLYMVNRQTR 314
            P+VL MVN QTR
Sbjct:   60 PKVLCMVNPQTR 71          
The following BLAST results are available for this feature:
BLAST of DY257990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_PYRAE1.042e-2240.2450S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]
RL15_BRUPA6.544e-1764.9160S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]
RL15_BRANA3.665e-1489.7460S ribosomal protein L15 (Fragment) OS=Brassica n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257990 ID=DY257990; Name=DY257990; organism=Citrus clementina; type=EST; length=866bp
GCTCAGCCAAAACTCTTATCATCACAGCACAGGTGAGCTCGACGATCGAA
CAATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCG
GATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCA
CCCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCC
GCTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTA
AGACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAA
ACCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTT
CAGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTC
AACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAAT
CCTGGTGGATGCTGCCCACAATGCTATCCGCAATGACCCCAGGATCAACT
GGATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCT
GCTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAA
GGCACGACCTTCAAGAAGGGCAACCTGGAAGAGGAACCAAACTCTCTCTC
TCAGGCGTTACCGTTAAACTTCTGTATTGTTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTGAACTCCGAAACAAGTGTTT
TGGGTTAGTTTTTGCTGCAACATGGTTAATTTTGTTTCATTTGGGCAATT
GAATTTTGTATTTCCTATGGATTGTTTTATCCGATAAATACCTTCTATAT
TTGTGGGATTCATTCC
back to top