DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYCB_TAKRU (Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.279e-31
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+   G+K F  KCAQCHTV +G  HK GPNL GLFGR++G   G+SY+ ANK   +IW E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK ST+
Sbjct:    3 GDIAKGKKAFVQKCAQCHTVEQGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWSEETLMVYLENPKKYIPGTKMIFAGIKKKTERADLIAYLKSSTS 105          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC1_ARATH (Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.279e-31
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+CAQCHT+  G G+K GP L+GLFGR++G+  GYSY+ ANK   + W++ TL+ YL NPKKYIPGTKM F GLKKP+DR DLI +L+E T
Sbjct:   10 GDAKKGANLFKTRCAQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWKDDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEEET 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_TARBA (Cytochrome c OS=Tarsius bancanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK G NL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGXNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_DEBOC (Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K    +FKT+C QCHTV KG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ +YL NPKKYIPGTKM F GLKKP+DR DLI YL  +T
Sbjct:    8 GSEKKDANLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRKSGQAAGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLITYLANAT 109          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_DANRE (Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.671e-31
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+K+F  KCAQCHTV  G  HK GPNL GLFGR++G   G+SY+ ANK   ++W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGFSYTDANKSKGIVWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_SQUSU (Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.182e-31
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+K+F  KCAQCHTV  G  HK GPNL+GLFGR++G   G+SY+ ANK   + W+++TL  YL NPKKYIPGTKM+F GLKK  +R DLIAYLK++ A
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKTGPNLSGLFGRKTGQAQGFSYTDANKSKGITWQQETLRIYLENPKKYIPGTKMIFAGLKKKSERQDLIAYLKKTAA 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.182e-31
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G  + G+KIF  KC QCHTV  G  HK GPNL+GLFGR+ G  PG++Y+ ANKG  + W+ +TL+ YL NPKKYIPGTKMVF GLK   +R  LIAYL+++T
Sbjct:    1 GZAZKGKKIFTQKCLQCHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWKNQTLFEYLENPKKYIPGTKMVFAGLKBZTERVHLIAYLZZAT 102          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_GIBZE (Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.182e-31
Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+CAQCHTV K  G+K GP L+GL+GR++G+  GYSY+ ANK   + W + TL+ YL NPKKYIPGTKM F GLKK +DR DLIAYLK+ST
Sbjct:    7 GDIKKGANLFKTRCAQCHTVEKDGGNKIGPALHGLWGRKTGSVEGYSYTDANKQKGIEWNDDTLFEYLENPKKYIPGTKMAFGGLKKAKDRNDLIAYLKDST 108          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EISFO (Cytochrome c OS=Eisenia foetida PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.182e-31
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P G+ + G+ IFK +CAQCHTV KG  HK GPNL+G+FGR +G   G++Y+ ANK   + W + TLY YL NPKKYIPGTKMVF GLK  + RA+LIAYL++ T
Sbjct:    4 PAGDVEKGKTIFKQRCAQCHTVDKGGPHKTGPNLHGIFGRATGQAAGFAYTDANKSKGITWTKDTLYEYLENPKKYIPGTKMVFAGLKNEKQRANLIAYLEQET 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_SAISC (Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.850e-31
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G++IF  KC+QCHTV KG  HK GPNL+GLFGR++G   G++Y+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKRIFIQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKGEREDLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYCB_TAKRU1.279e-3162.14Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 ... [more]
CYC1_ARATH1.279e-3159.80Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 ... [more]
CYC_TARBA1.671e-3161.76Cytochrome c OS=Tarsius bancanus GN=CYCS PE=3 SV=3[more]
CYC_DEBOC1.671e-3161.76Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 ... [more]
CYC_DANRE1.671e-3160.19Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3[more]
CYC_SQUSU2.182e-3159.22Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2[more]
CYC_HELAS2.182e-3158.82Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_GIBZE2.182e-3161.76Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1[more]
CYC_EISFO2.182e-3158.65Cytochrome c OS=Eisenia foetida PE=1 SV=1[more]
CYC_SAISC2.850e-3159.80Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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