DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_HANAN (Cytochrome c OS=Hansenula anomala PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.850e-31
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGRQSG   GYSY+ AN   AV W E+T+ +YL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    7 GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGKAEGYSYTDANIKKAVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLANAT 108          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_TETNG (Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.723e-31
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+   G+K F  KCAQCHTV +G  HK GPNL GLFGR++G   G+SY+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK ST+
Sbjct:    2 GDIAKGKKTFVQKCAQCHTVEEGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWNEDTLLEYLENPKKYIPGTKMIFAGIKKKAERQDLIAYLKSSTS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_STELP (Cytochrome c OS=Stellaria longipes PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+CAQCHT+ +G G+K GPNL+GLFGR +G+  G+SY+ ANK   + W + TL+ YL NPKKYIPGTKM F GLKK +DR DLI +L++ST
Sbjct:    6 GDAKKGANLFKTRCAQCHTLGEGEGNKIGPNLHGLFGRHTGSVEGFSYTDANKAKGIEWNKDTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDLITFLQDST 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PICST (Cytochrome c OS=Pichia stipitis GN=CYC1 PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.862e-31
Identity = 64/110 (58.18%), Postives = 79/110 (71.82%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            A FE+   G+ K G  +FKT+C QCHTV +G  HK GPNL+G+ GR+SG   GYSY+ ANK   V W E+T+ +YL NPKKYIPGTKM F GLKKP+DR DL+ YL  +T
Sbjct:    3 APFEK---GSEKKGATLFKTRCLQCHTVEEGGPHKVGPNLHGIMGRKSGQAVGYSYTDANKKKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLASAT 109          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_OTOGA (Cytochrome c OS=Otolemur garnettii GN=CYCS PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.350e-31
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 2
Query:   68 GEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLI YLK++T
Sbjct:    7 GKKIFVQKCAQCHTVDKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGVKKKGERADLIDYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_KATPE (Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.350e-31
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W E TL  YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct:    2 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_CURLU (Cytochrome c OS=Curvularia lunata PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.350e-31
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+CAQCHT+  G G+K GP L+GLFGR++G+  GYSY+ ANK   + W   TL+ YL NPKKYIPGTKM F GLKKP+DR DLI +L++ T
Sbjct:    6 GDAKKGANLFKTRCAQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWNHDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEQET 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PICPA (Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 65/110 (59.09%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            A FE+   G+ K G  +FKT+C QCHTV  G  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ +YL NPKKYIPGTKM F GLKK +DR DLI YL  +T
Sbjct:    3 APFEK---GSEKKGATLFKTRCLQCHTVEAGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKRKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLITYLASAT 109          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC1_YEAST (Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=CYC1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 62/105 (59.05%), Postives = 74/105 (70.48%), Query Frame = 2
Query:   41 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 355
            E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    V+W+E  +  YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct:    3 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PACTA (Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G  +FKT+C QCHT   G  HK GPNLNG+FGR SG   GYSY+ ANK    +WE +T+ +YL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    8 GSAKKGATLFKTRCLQCHTTEAGGAHKVGPNLNGVFGRHSGQAEGYSYTDANKQKGALWEAQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYLLSAT 109          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_HANAN2.850e-3161.76Cytochrome c OS=Hansenula anomala PE=1 SV=1[more]
CYC_TETNG3.723e-3161.17Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3... [more]
CYC_STELP4.862e-3158.82Cytochrome c OS=Stellaria longipes PE=3 SV=1[more]
CYC_PICST4.862e-3158.18Cytochrome c OS=Pichia stipitis GN=CYC1 PE=3 SV=3[more]
CYC_OTOGA6.350e-3163.92Cytochrome c OS=Otolemur garnettii GN=CYCS PE=3 SV... [more]
CYC_KATPE6.350e-3159.22Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=... [more]
CYC_CURLU6.350e-3158.82Cytochrome c OS=Curvularia lunata PE=3 SV=1[more]
CYC_PICPA1.083e-3059.09Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3[more]
CYC1_YEAST1.083e-3059.05Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=... [more]
CYC_PACTA1.415e-3058.82Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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