DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EUGGR (Cytochrome c OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 349
            G+ + G+K+F+++ AQCH+  KG  +  GP+L G++GR SG+ PGY+YS ANK  A++WEE+TL+ +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:    1 GDAERGKKLFESRAAQCHSAQKGV-NSTGPSLWGVYGRTSGSVPGYAYSNANKNAAIVWEEETLHKFLENPKKYVPGTKMAFAGIKAKKDRQDIIAYMK 98          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC1_DROME (Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c-d PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 355
            G+ + G+KIF  KCAQCHT   G  HK GPNL G+ GR+ GT  GY Y+ AN    V W E  L  YL +PKKYIPGTKMVF GLKK ++RADLIA+LK +
Sbjct:    4 GDAENGKKIFVQKCAQCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYKYTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAFLKSN 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EUGVI (Cytochrome c OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 51/99 (51.52%), Postives = 74/99 (74.75%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 349
            G+ + G+K+F+++  QCH+  KG  +  GP L G++GR SGT PGY+YS ANK  A++WE+++L  +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:    1 GDAERGKKLFESRAGQCHSSQKGV-NSTGPALYGVYGRTSGTVPGYAYSNANKNAAIVWEDESLNKFLENPKKYVPGTKMAFAGIKAKKDRLDIIAYMK 98          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_RHOGL (Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2
Query:   44 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 349
            APPG+P  G+ +F T C  CHT +KG  +K GP+L G+ GR SG  PGY+YS AN    ++W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct:    3 APPGDPVEGKHLFHTICILCHTDIKGR-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVA (Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 352
            G+P  GE++FK +C  CH V   A +  GP  N +FG+++G  PG++YS A K   + W+E TL  YL NPK  +PGTKMVF GLK PQDRAD+IAYLK+
Sbjct:    2 GDPVKGEQVFK-QCKICHQVGPTAKNGVGPEQNDVFGQKAGARPGFNYSDAMKNSGLTWDEATLDKYLENPKAVVPGTKMVFVGLKNPQDRADVIAYLKQ 100          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVI (Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            AS   A   +  +GE++FK +C  CH++  GA +K GP LNGLFGR SGT  G++YS ANK   + W E+    Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+K+  A
Sbjct:   13 ASVAPAAAQDAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 122          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_RHOAC (Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+P AG+K+F  KCA CH +  GA +  GP+LNG+  R++G   G++YS ANK   + W+E T   Y+  P+K +PGTKM FPGL    DR ++ AYL +  A
Sbjct:    2 GDPDAGQKVF-LKCAACHKIGPGAKNGVGPSLNGVANRKAGQAEGFAYSDANKNSGLTWDEATFKEYITAPQKKVPGTKMTFPGLPNEADRDNIWAYLSQFKA 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 2
Query:   62 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 352
            +AG   F+ KCA CH V +GA +K GP LNGL GR+SGT  G++YS ANK   + W++ T   Y+ +P+  IPGTKMVF G+K  +++ DL AYL +
Sbjct:    4 EAGAVSFR-KCAPCHAVGEGAANKVGPVLNGLPGRKSGTIAGFNYSDANKNSGITWDKATFKTYITDPRAKIPGTKMVFAGIKNDKEQDDLWAYLSQ 99          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_RHOMA (Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   65 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---VIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 349
            AG+K+++ +C  CH+V +GA ++ GP  N LFGR +G+ P + YS A K      ++W +K+L+ YL NP+ Y+P TKM+F GLKKP+D   ++AYLK
Sbjct:    8 AGKKVYR-QCHACHSVGEGAKNRVGPEQNNLFGRVAGSLPDFRYSKAMKSAGENGLVWTDKSLHEYLKNPRAYVPKTKMIFAGLKKPEDIDAVVAYLK 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_TRYBB (Cytochrome c (Fragments) OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  116 KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 349
            +G  +  GPNL G+ GR+SGT  G++YS AN+   V+W  + L  YL NPKK++PGTKM F GLKKPQ+RADLIAYL+
Sbjct:   12 QGGSNGVGPNLYGIVGRKSGTVEGFTYSKANQDSGVMWTPQVLDVYLENPKKFMPGTKMSFAGLKKPQERADLIAYLE 89          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_EUGGR1.464e-2753.54Cytochrome c OS=Euglena gracilis PE=1 SV=1[more]
CYC1_DROME1.912e-2758.42Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC_EUGVI6.150e-2651.52Cytochrome c OS=Euglena viridis PE=1 SV=1[more]
CYC2_RHOGL4.408e-2450.00Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1[more]
CYC2_RHOVA1.282e-2353.00Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=... [more]
CYC2_RHOVI4.873e-2347.75Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA ... [more]
CYC2_RHOAC5.957e-2145.63Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 ... [more]
CYC21_RHOCR1.327e-2049.48Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CYC2_RHOMA6.586e-2045.92Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1[more]
CYC_TRYBB1.467e-1957.69Cytochrome c (Fragments) OS=Trypanosoma brucei bru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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