DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_HELAN (Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 2
Query:   26 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            MASF EAP GNP  GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSA NK  AVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK STA
Sbjct:    1 MASFAEAPAGNPTTGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAGNKNKAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKTSTA 112          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_FRIAG (Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 2
Query:   26 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            MASF EAPPG+ K+GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV W+E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+T+
Sbjct:    1 MASFSEAPPGDFKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_TROMA (Cytochrome c OS=Tropaeolum majus PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.996e-52
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ASF EAP G+ KAG+KIFK KCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV+W++ TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:    1 ASFAEAPAGDNKAGDKIFKNKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWZZATLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_WHEAT (Cytochrome c OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.454e-51
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ASF EAPPGNP AG KIFKTKCAQCHTV  GAGHKQGPNL+GLFGRQSGTT GYSYSAANK  AV WEE TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:    1 ASFSEAPPGNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_FAGES (Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.899e-51
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            A+F EAPPGN K+GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV W E TLY YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK+ST
Sbjct:    1 ATFSEAPPGNIKSGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVTWGEDTLYEYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKBST 110          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_GUIAB (Cytochrome c OS=Guizotia abyssinica PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.524e-51
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ASF EAP G+ KAGEKIFKTKCA+CHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV W++ +LY+YLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK STA
Sbjct:    1 ASFAEAPAGDAKAGEKIFKTKCAZCHTVZKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVAWZZBSLYDYLLNPKKYIPGTKMVFPGLKKPZZRADLIAYLKASTA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_GINBI (Cytochrome c OS=Ginkgo biloba PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.108e-50
Identity = 89/111 (80.18%), Postives = 101/111 (90.99%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            A+F EAPPG+PKAGEKIFKTKCA+CHTV KGAGHKQGPNL+GLFGRQSGTT GYSYS  NK  AV W ++TLY YLLNPKKYIPGTKMVFPGLKKP++RADLI+YLK++T+
Sbjct:    1 ATFSEAPPGDPKAGEKIFKTKCAZCHTVZKGAGHKQGPNLHGLFGRQSGTTAGYSYSTGNKNKAVNWGZZTLYEYLLNPKKYIPGTKMVFPGLKKPZZRADLISYLKQATS 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_NIGDA (Cytochrome c OS=Nigella damascena PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.977e-50
Identity = 89/111 (80.18%), Postives = 102/111 (91.89%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ASF++AP G+  +GEKIFKTKCA+CHTV +GAGHK+GPNL+GLFGRQSGT  GYSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKP++RA+L+AYLKESTA
Sbjct:    1 ASFBZAPAGBSASGEKIFKTKCAZCHTVBZGAGHKZGPNLHGLFGRQSGTVAGYSYSAANKNKAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPZZRABLLAYLKESTA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PASSA (Cytochrome c OS=Pastinaca sativa PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.777e-49
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ASF EAPPG+   G KIFKTKCA+CHTV  GAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV+W + TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK +TA
Sbjct:    1 ASFAEAPPGDKDVGGKIFKTKCAZCHTVZLGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWABBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKHATA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_SPIOL (Cytochrome c OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.321e-49
Identity = 93/110 (84.55%), Postives = 95/110 (86.36%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            A+F EAPPGN   G KIFKTKCAQCHTV  GAGHKQGPNLNGLFGRQSGT   YSYSAANK  AVIW E TLY YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ST
Sbjct:    1 ATFSEAPPGNKDVGAKIFKTKCAQCHTVDLGAGHKQGPNLNGLFGRQSGTAASYSYSAANKNKAVIWSEDTLYEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKDST 110          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_HELAN4.519e-5388.39Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV... [more]
CYC_FRIAG1.007e-5287.50Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 ... [more]
CYC_TROMA4.996e-5286.49Cytochrome c OS=Tropaeolum majus PE=1 SV=1[more]
CYC_WHEAT1.454e-5186.49Cytochrome c OS=Triticum aestivum PE=1 SV=1[more]
CYC_FAGES1.899e-5187.27Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1[more]
CYC_GUIAB5.524e-5183.78Cytochrome c OS=Guizotia abyssinica PE=1 SV=1[more]
CYC_GINBI6.108e-5080.18Cytochrome c OS=Ginkgo biloba PE=1 SV=1[more]
CYC_NIGDA7.977e-5080.18Cytochrome c OS=Nigella damascena PE=1 SV=1[more]
CYC_PASSA1.777e-4982.88Cytochrome c OS=Pastinaca sativa PE=1 SV=1[more]
CYC_SPIOL2.321e-4984.55Cytochrome c OS=Spinacia oleracea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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