DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.541e-44
Identity = 78/111 (70.27%), Postives = 93/111 (83.78%), Query Frame = 2
Query:   29 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            ++F +APPG+P  G KIFK KCA+CHTV  GAGHKQGPNLNG FGR SGT  G+SYSAA+K     W++ TLY+YLLNPKKYIPGTKMVF GLKKP++RADLIA+LK++TA
Sbjct:    1 STFABAPPGBPAKGAKIFKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAGFSYSAABKBKTADWBZBTLYDYLLNPKKYIPGTKMVFAGLKKPZBRADLIAFLKDATA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.687e-42
Identity = 80/112 (71.43%), Postives = 90/112 (80.36%), Query Frame = 2
Query:   26 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            M++F EAP G+   GEKIFKTKCAQCH   KG GHKQGPNL GLFGR SGT  G++YS ANK  AV W E TLY YLLNPKKY+PG KMVF GLKKP++RADLIAYLK++TA
Sbjct:    1 MSTFAEAPAGDLARGEKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAGFAYSKANKEAAVTWGESTLYEYLLNPKKYMPGNKMVFAGLKKPEERADLIAYLKQATA 112          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_SCHGR (Cytochrome c OS=Schistocerca gregaria PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.943e-36
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P G+ + G+KIF  +CAQCHTV  G  HK GPNL+GLFGR++G  PG+SY+ ANK   + W+E TL+ YL NPKKYIPGTKMVF GLKKP++RADLIAYLKEST
Sbjct:    4 PQGDVEKGKKIFVQRCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDENTLFIYLENPKKYIPGTKMVFAGLKKPEERADLIAYLKEST 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_APIME (Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.556e-36
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P G+P+ G+KIF  KCAQCHT+  G  HK GPNL G++GR++G  PGYSY+ ANKG  + W ++TL+ YL NPKKYIPGTKMVF GLKKPQ+RADLIAY+++++
Sbjct:    4 PAGDPEKGKKIFVQKCAQCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAYIEQAS 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PONAB (Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PANTR (Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_HUMAN (Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_GORGO (Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.615e-34
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P GN + G+KIF  +CAQCHTV  G  HK GPNL+G +GR++G  PG+SYS ANK   + W + TL+ YL NPKKYIPGTKMVF GLKK  +RADLIAYLKEST
Sbjct:    4 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_MACSY (Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_ENTIN6.541e-4470.27Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC_CHLRE4.687e-4271.43Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_SCHGR2.943e-3666.35Cytochrome c OS=Schistocerca gregaria PE=1 SV=2[more]
CYC_APIME6.556e-3662.50Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2[more]
CYC_PONAB5.550e-3565.69Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3[more]
CYC_PANTR5.550e-3565.69Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2[more]
CYC_HUMAN5.550e-3565.69Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2[more]
CYC_GORGO5.550e-3565.69Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE... [more]
CYC_SAMCY1.615e-3464.42Cytochrome c OS=Samia cynthia PE=1 SV=2[more]
CYC_MACSY2.109e-3464.71Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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