DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_CANFA (Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.367e-33
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_ASPNG (Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.367e-33
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   23 KMASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            K ASF    PG+   G K+F+T+CAQCHTV  G  HK GPNL+GLFGR++G + GY+Y+ ANK   V W+E TL++YL NPKK+IPGTKM F GLKK ++R DLI YLKESTA
Sbjct:    2 KDASFA---PGDSAKGAKLFQTRCAQCHTVEAGGPHKVGPNLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLFSYLENPKKFIPGTKMAFGGLKKGKERNDLITYLKESTA 111          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_MINSC (Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEATLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EQUBU (Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W+E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EQUAS (Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W+E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+KIF  KCAQCHTV K   HK GPNL GLFGR++G  PG+SY+ ANK   ++W E TL+ YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_PECGU (Cytochrome c OS=Pectinaria gouldii PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.045e-33
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 2
Query:   41 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            + P G+   G+K+F  +CAQCHTV  G  HK GPNL+GLFGR++G  PG+SY+ ANK   + W + TL+ YL NPKKYIPGTKM+F GLKK  +RADLIAYL+EST
Sbjct:    3 DIPAGDAAKGKKVFVQRCAQCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGITWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEEST 108          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKIAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_HORSE (Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG++Y+ ANK   + W+E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_EMENI (Cytochrome c OS=Emericella nidulans GN=cycA PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   50 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            PG+   G K+F+T+C QCHTV  G GHK GPNL+GLFGR++G   GY+Y+ ANK   V W+E +L+ YL NPKK+IPGTKM F GLKK ++R DLI YLKESTA
Sbjct:   10 PGDSTKGAKLFETRCKQCHTVENGGGHKVGPNLHGLFGRKTGQAEGYAYTDANKQADVTWDENSLFKYLENPKKFIPGTKMAFGGLKKTKERNDLITYLKESTA 113          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_CANFA1.367e-3363.73Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2[more]
CYC_ASPNG1.367e-3361.06Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=... [more]
CYC_MINSC1.785e-3363.73Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE... [more]
CYC_EQUBU1.785e-3362.75Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2[more]
CYC_EQUAS1.785e-3362.75Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2[more]
CYC1_XENTR1.785e-3363.11Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC_PECGU3.045e-3360.38Cytochrome c OS=Pectinaria gouldii PE=3 SV=1[more]
CYC_MIRLE3.977e-3363.73Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2[more]
CYC_HORSE3.977e-3361.76Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2[more]
CYC_EMENI3.977e-3361.54Cytochrome c OS=Emericella nidulans GN=cycA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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