DY258000

Overview
NameDY258000
Unique NameDY258000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_ATESP (Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.578e-32
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ + G++IF  KC+QCHTV KG  HK GPNL+GLFGR++G   G++Y+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKRIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQASGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC1B_XENLA (Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-B PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.578e-32
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+   G+KIF  KCAQCHTV K   HK GPNL GLFGR++G  PG+SY+ ANK   ++W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAGKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEETLLEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+G+FGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGIFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_DROME (Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c-p PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P G+ + G+K+F  +CAQCHTV  G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC2_CERCA (Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   47 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            P G+ + G+K+F  +CAQCHTV  G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_USTSP (Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 358
            G+ K G +IFKT+CAQCHT+  G  +K GPNL+GLFGR+SGT  G+SY+ ANK    +WEE+T   YL NPKKYIPGTKM F GLKK +DR DL+ YL+E T
Sbjct:    5 GDAKKGARIFKTRCAQCHTLGAGEPNKVGPNLHGLFGRKSGTVEGFSYTDANKKAGQVWEEETFLEYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLREET 106          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_ROSNE (Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ K GEK+F T+CAQCHT+ +G G+K GP L+GLFGR++G+  GY+Y+ ANK   + W E TL+ YL NPKKYIPGTKM F GLKK +DR DLI+YLK+ TA
Sbjct:    6 GDLKKGEKLFTTRCAQCHTLKEGEGNKVGPALHGLFGRKTGSVEGYAYTDANKQKGIEWTEDTLFTYLENPKKYIPGTKMAFGGLKKDKDRNDLISYLKKETA 108          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_MELGA (Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.743e-32
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of DY258000 vs. ExPASy Swiss-Prot
Match: CYC_NEUCR (Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.501e-32
Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   53 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 361
            G+ K G  +FKT+CAQCHT+ +G G+K GP L+GLFGR++G+  GY+Y+ ANK   + W+E TL+ YL NPKKYIPGTKM F GLKK +DR D+I ++KE+TA
Sbjct:    6 GDSKKGANLFKTRCAQCHTLEEGGGNKIGPALHGLFGRKTGSVDGYAYTDANKQKGITWDENTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDIITFMKEATA 108          
The following BLAST results are available for this feature:
BLAST of DY258000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_ATESP2.578e-3260.78Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3[more]
CYC1B_XENLA2.578e-3262.14Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-... [more]
CYC_APTPA3.367e-3260.19Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]
CYC2_DROME3.367e-3258.65Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC2_CERCA3.367e-3258.65Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2[more]
CYC_USTSP5.743e-3261.76Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1[more]
CYC_ROSNE5.743e-3261.17Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 S... [more]
CYC_MELGA5.743e-3260.19Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV... [more]
CYC_CHICK5.743e-3260.19Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]
CYC_NEUCR7.501e-3258.25Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258000 ID=DY258000; Name=DY258000; organism=Citrus clementina; type=EST; length=752bp
GAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTCCAC
CTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCTCAG
TGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTTGAA
TGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATTCAG
CTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTACAAT
TACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTTCCC
TGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGAAGG
AGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATGGGA
AGAAGATGCAGGAGTTTATTCATATTTGCAGCCTTGTTGATACAGATCTG
TCATAACGCTGGCAACGATGCATTCGTCCATGAAAGGCAACAATCAAGAC
TAGCTTGAAAGATCATATTCGTGCACAAACCTTCAAGAGCCATGCACGTG
GACAAGGGTATCTTTGATTTTTTGCAGTTAGAGGTTGAAGAATGGTTATA
GACATGATATGCAGAATGAGAGTATTAAAAGTACATTACTTAAATGTTGC
TGTCTGTAGGGATGTTTATGCCATCCAAGATAAAAATAGGTTAAAGTTTA
GGGGCTATTTTAACTTCAACTTTTTTATATTAAGTTAGCAAAATTTTATT
GC
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