DY258006

Overview
NameDY258006
Unique NameDY258006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:666..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.968e-45
Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GADSFL S+DP++++ AMGT+D IIDT+SA H ++PL+GLLK  GKLV VG P KPLEL V  L+ GRK + GS+ GGMKETQEM+DF  KHNITADIE+I M  +NTAMERL KADV+YRFVID+AN+
Sbjct:  227 GADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANS 355          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.247e-43
Identity = 83/130 (63.85%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL S DP++++ A GT+D IIDT+SAVH ++ L+GLLK  GKLV VG P KPL+LP+  L+ GRK + GS+ GG+KETQEM+DF  KHNI A+IE+I MD +NTA+ERL+KADV+YRFVID+AN+L
Sbjct:  220 GADSFLLSSDPEKMKAATGTMDYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSL 349          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.842e-42
Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL + D  +++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G P+KPL+LP+ SL++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RLAK+DVRYRFVID+AN+L
Sbjct:  224 GADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.167e-41
Identity = 84/130 (64.62%), Postives = 105/130 (80.77%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GAD+F+ S++ D++  A GT+DGII+TVSA  PI PL+GLLK  GK++LVG P+KP+E+P  +L+   KT++GS  GGM +T EMID AAKH +TA+IEVI  DYVNTAMERLAKADVRYRFVIDI NTL
Sbjct:  221 GADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 79/132 (59.85%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 396
            GAD+F+ S   ++++ A  T+DG+I+TVSA  P+ P + LLK  GK++LVG P+ PLE+P  SL+ G +T++GS+ GGM +TQEMI+ AAKH +TADIEVI  D VNTAMERLAKADVRYRFVID+ NTL+A
Sbjct:  231 GADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTLHA 362          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.092e-39
Identity = 79/130 (60.77%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GADSFL + D  +++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G  +KPL+LP+  L++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RL K+DVRYRFVID+AN+L
Sbjct:  223 GADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.060e-38
Identity = 74/129 (57.36%), Postives = 98/129 (75.97%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD FL SRD  Q+  A GT+DGI++TVSA HP+ PL  L+K   ++V VGAP +PLELP  +++ G K ++G+  GG+++ Q M+DFA +H ITA++EVI MDYVNTAMERL K DVRYRFVID+A +
Sbjct:  298 GADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPLFALMKPMAQMVFVGAPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 426          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.335e-37
Identity = 75/130 (57.69%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GAD+FL S + +Q++ A GT+DGIIDTVSAVH + PL+ LL++ G+LV VG+P KP++L +  L    K+V+GS  GGM++TQEM+DFA +H + A++EVI M+ VN AMERL K DVRYRFVID+ANT+
Sbjct:  229 GADAFLLSTNAEQMKAAAGTMDGIIDTVSAVHDLTPLITLLRTHGQLVPVGSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRFVIDVANTM 358          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.744e-37
Identity = 74/132 (56.06%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 396
            GAD FL SRD  Q+  A  T+DGI++TVSA HPI PL  L+K   ++V VG P +PLELP  +++ G K ++G+  GG+++ Q M+DFA +H ITA++EVI MDYVNTAMERL K DVRYRFVID+A +  A
Sbjct:  301 GADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAPLFSLMKPMAQMVFVGGPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGSSLA 432          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.074e-37
Identity = 72/132 (54.55%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 396
            GAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL+ LLK +G++V+VGAP  PL+LP  ++I G K V+G+  G + E Q M+DFA +H I AD+EV++MD VN A+ RL + DVRYRFV+D+A T++A
Sbjct:  223 GADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNGVGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGTMHA 354          
The following BLAST results are available for this feature:
BLAST of DY258006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_MEDSA2.968e-4567.44Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU1.247e-4363.85Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH2_ARATH6.842e-4263.08Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH5_ORYSJ1.167e-4164.62Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ORYSJ2.201e-4059.85Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH3_ARATH1.092e-3960.77Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CAD8B_ORYSJ2.060e-3857.36Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH9_ORYSJ1.335e-3757.69Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CAD8C_ORYSJ1.744e-3756.06Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8D_ORYSJ5.074e-3754.55Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258006 ID=DY258006; Name=DY258006; organism=Citrus clementina; type=EST; length=599bp
GGCGCTGATTCATTTTTGAATAGCCGTGACCCTGACCAATTGCAGGGTGC
TATGGGCACATTGGATGGTATTATTGACACGGTGTCCGCTGTGCACCCCA
TTTTGCCATTGGTCGGTCTATTAAAGTCCCAGGGCAAGCTTGTTCTGGTT
GGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCCTTAATTATGGG
GAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAAAGAGACGCAAG
AGATGATTGATTTTGCAGCAAAACACAATATAACAGCTGACATTGAGGTT
ATTTCGATGGATTATGTCAATACGGCAATGGAGAGGCTTGCCAAGGCTGA
TGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTTGTACGCCACCA
AACCTTGAAGAATCAAAATCAGATTGATGTCTTCAATTCACAACCTTGTT
CCATGATCCACTTTGCTATATGTAATGCTCCCTCGATCATTACACTCTTT
TAGCGCTTAAATTACTTTTAATTTCCAGTTACATCGACCCTAATTATGTC
GTGATTGCCGAAAAACTATAAATGTTAATGAAATAAAACATTGTTCATA
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