DY258006

Overview
NameDY258006
Unique NameDY258006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:666..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.074e-37
Identity = 75/132 (56.82%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 396
            GAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL+ LLK +G++V+VGAP  PL+LP I++I G K V+GS  G + E Q M+DFA +H I AD+EV++M  VN A+ RL + DVRYRFVID+A TL+A
Sbjct:  223 GADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGTLHA 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.476e-36
Identity = 75/125 (60.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    4 ADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 378
            AD+F+ S D  Q+Q    +LD IIDTV+A H + P++ LLK  GKLVLVGAP+KP+ELP   LI G++TVSGS TGGMKETQEM+D   +HNIT DIE++S D +N A+ RLA+ DVRYRFVI++
Sbjct:  230 ADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINV 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.327e-36
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GAD F+ S +  +++ AMGT+ GII+T SA   +   + LLK +GK++LVG P+KPL++P  +L+ G K ++GS  G + ETQEMIDFAA+H + ADIE+I  D VNTAMERLAK DVRYRFV+DI NTL
Sbjct:  247 GADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTL 376          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.419e-32
Identity = 63/129 (48.84%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S+D +++  A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  GGM+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  225 GADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGRRSIAGSFIGGMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.419e-32
Identity = 65/126 (51.59%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 378
            GAD +L S D D++Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM+DF  +  +T+ IE++ MDY+NTAMERL K DVRYRFV+D+
Sbjct:  225 GADDYLVSSDTDKMQEASDSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDV 350          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.383e-32
Identity = 63/129 (48.84%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S+D +++Q A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  225 GADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVARS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.383e-32
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D  Q+Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK ++GS  G MKET+EM+DF  +  IT+ IEV+ MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  226 GADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGS 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 63/127 (49.61%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 381
            GAD++L S+D +++Q A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A
Sbjct:  225 GADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVA 351          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.160e-31
Identity = 62/129 (48.06%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S+D +++  A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  225 GADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.434e-31
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD +L S D + +Q A   LD IIDTV  VHP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM++F  +  + + IEVI MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  225 GADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
The following BLAST results are available for this feature:
BLAST of DY258006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CAD8A_ORYSJ5.074e-3756.82Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH6_ORYSJ1.476e-3660.00Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH7_ORYSJ7.327e-3656.15Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH_PINTA6.419e-3248.84Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH1_TOBAC6.419e-3251.59Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH2_PICAB8.383e-3248.84Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH1_ARACO8.383e-3251.94Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH7_PICAB1.095e-3149.61Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH_PINRA4.160e-3148.06Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH_POPDE5.434e-3150.39Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258006 ID=DY258006; Name=DY258006; organism=Citrus clementina; type=EST; length=599bp
GGCGCTGATTCATTTTTGAATAGCCGTGACCCTGACCAATTGCAGGGTGC
TATGGGCACATTGGATGGTATTATTGACACGGTGTCCGCTGTGCACCCCA
TTTTGCCATTGGTCGGTCTATTAAAGTCCCAGGGCAAGCTTGTTCTGGTT
GGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCCTTAATTATGGG
GAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAAAGAGACGCAAG
AGATGATTGATTTTGCAGCAAAACACAATATAACAGCTGACATTGAGGTT
ATTTCGATGGATTATGTCAATACGGCAATGGAGAGGCTTGCCAAGGCTGA
TGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTTGTACGCCACCA
AACCTTGAAGAATCAAAATCAGATTGATGTCTTCAATTCACAACCTTGTT
CCATGATCCACTTTGCTATATGTAATGCTCCCTCGATCATTACACTCTTT
TAGCGCTTAAATTACTTTTAATTTCCAGTTACATCGACCCTAATTATGTC
GTGATTGCCGAAAAACTATAAATGTTAATGAAATAAAACATTGTTCATA
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