DY258006

Overview
NameDY258006
Unique NameDY258006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:666..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.097e-31
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD +L S D D++Q A  +LD IIDTV   HP+   + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM+DF  +  +T+ IE++ MDY+NTAMERL K DV YRFV+D+A +
Sbjct:  225 GADDYLVSSDTDKMQEAADSLDYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVSYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.269e-31
Identity = 64/129 (49.61%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+A +
Sbjct:  224 GADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGS 352          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.697e-30
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  225 GADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.697e-30
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  225 GADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.283e-29
Identity = 61/129 (47.29%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD +L S D  ++Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKE  EM++F  + ++++ IE++ MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  225 GADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVSPMVMLGRKSITGSFIGSMKELAEMLEFCKEKDLSSTIEIVKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.642e-29
Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD +L S D  Q+  AM +LD IIDTV   HP+ P + LLK  GKLVL+G   +PL      +++GRKT++GS  G ++ET+E++ F     +T+ IEV+ MDY+N A+ERL + DVRYRFV+D+A +
Sbjct:  226 GADDYLVSSDEAQMAAAMDSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIGEPLSFVSPMVMLGRKTITGSFIGSIEETEEVLRFCVDKGLTSQIEVVKMDYLNQALERLERNDVRYRFVVDVAGS 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.524e-28
Identity = 60/131 (45.80%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLY 393
            GAD++L S D   +Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G +KET+EM++F  +  +T+ IE+++MDY+N A ERL K DVRYRFV+D+  + +
Sbjct:  226 GADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKF 356          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 61/129 (47.29%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D + ++ A  +LD + DT+  VHP+ P + LLK  GKL+L G  + PL+   IS ++  ++++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  225 GADAYLVSSDENGMKEATDSLDYVFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQF--ISPMVMLESITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 351          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 60/129 (46.51%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GKL+L+G  ++PL      +++GRK ++GS  G M ET+E+++F     +T+ IEV+ MDYVN A+ERL + DVRYRFV+D+A +
Sbjct:  225 GADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/126 (48.41%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELP-VISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVID 375
            GAD  +NSR+ D++   + + D I++TV+A H +     LLK  G + LVGAP  P + P V +LIM R+ ++GS  GG+ ETQEM+DF A+H I ADIE+I  D +N A ER+ + DV+YRFVID
Sbjct:  218 GADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVID 343          
The following BLAST results are available for this feature:
BLAST of DY258006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CADH2_TOBAC7.097e-3149.61Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_EUCBO9.269e-3149.61Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_EUCGL2.697e-3048.84Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU2.697e-3048.84Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH1_OCIBA2.283e-2947.29Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH_LOLPR6.642e-2948.06Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH_MEDSA2.524e-2845.80Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH1_EUCGU9.591e-2847.29Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH2_ORYSJ1.636e-2746.51Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
YAHK_ECOLI1.060e-2648.41Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258006 ID=DY258006; Name=DY258006; organism=Citrus clementina; type=EST; length=599bp
GGCGCTGATTCATTTTTGAATAGCCGTGACCCTGACCAATTGCAGGGTGC
TATGGGCACATTGGATGGTATTATTGACACGGTGTCCGCTGTGCACCCCA
TTTTGCCATTGGTCGGTCTATTAAAGTCCCAGGGCAAGCTTGTTCTGGTT
GGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCCTTAATTATGGG
GAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAAAGAGACGCAAG
AGATGATTGATTTTGCAGCAAAACACAATATAACAGCTGACATTGAGGTT
ATTTCGATGGATTATGTCAATACGGCAATGGAGAGGCTTGCCAAGGCTGA
TGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTTGTACGCCACCA
AACCTTGAAGAATCAAAATCAGATTGATGTCTTCAATTCACAACCTTGTT
CCATGATCCACTTTGCTATATGTAATGCTCCCTCGATCATTACACTCTTT
TAGCGCTTAAATTACTTTTAATTTCCAGTTACATCGACCCTAATTATGTC
GTGATTGCCGAAAAACTATAAATGTTAATGAAATAAAACATTGTTCATA
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