DY258006

Overview
NameDY258006
Unique NameDY258006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:666..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 378
            GAD ++   D  ++     +LD +IDTV   H + P + LLK  GKL+L+G  + PL+     L++GRK ++GS  G MKET+EM++F  +  +++ IEV+ MDYVNTA ERL K DVRYRFV+D+
Sbjct:  225 GADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDV 350          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD ++ S DP ++Q    +LD IIDTV   HP+ P +  LK  GKL+L+G  + PL+     +I+GRK +SGS  G +KET+E++ F  +  +T+ IE + +D +N A ERL K DVRYRFV+D+A +
Sbjct:  226 GADDYVVSSDPAEMQRLADSLDYIIDTVPVFHPLDPYLACLKLDGKLILMGVINTPLQFVTPLVILGRKVISGSFIGSIKETEEVLAFCKEKGLTSTIETVKIDELNIAFERLRKNDVRYRFVVDVAGS 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.030e-26
Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 381
            GA+ +  + DP       G  D I++TVSA   +   + +L+  G LV VGAP KP    V SLIMGR++++GS  GG++ETQEM+DFAA+H I   IEVI  D V+ A ER+ ++DVRYRFVIDI+
Sbjct:  221 GANHYFATSDPATFTALAGRFDVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVRYRFVIDIS 347          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 59/129 (45.74%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GKLVL+G   +PL      +++GRK ++GS  G + ET E++ F     +T+ IEV+ M YVN A+ERL + DVRYRFV+D+A +
Sbjct:  225 GADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.600e-25
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GK VL+G   +PL      +++GRK ++GS  G + ET E++ F     +T+ IEV+ M YVN A++RL + DVRYRFV+D+A +
Sbjct:  225 GADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALDRLERNDVRYRFVVDVAGS 353          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 56/127 (44.09%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 381
            GA S+  + DPD  +   G  D I++TVSA   +   + LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  218 GAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 56/127 (44.09%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 381
            GA S+  + DPD  +   G  D I++TVSA   +   + LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  218 GAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.888e-24
Identity = 58/130 (44.62%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 390
            GA++F+ S D DQ++    +LD ++DT S  H   P + LLK  G  VLVG P + +++   +L +G + ++GS TGG K TQ+M+DF A H I  +IEVI +  +N A+ER+ K D++YRFVIDI N+L
Sbjct:  226 GAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSE-IKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIKYRFVIDIKNSL 354          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 58/129 (44.96%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD+F+ S D +Q++    +L+ IIDT S  HP  P + LLK  G + L+  P + +++   +L +G +++SGS TGG K+ QEMI+F A + I  DIE+I +DY+N A++RL   DVR+RFVIDI N+
Sbjct:  225 GADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSE-IKVHPANLNLGGRSLSGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVRFRFVIDIENS 352          
BLAST of DY258006 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.170e-23
Identity = 57/129 (44.19%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 GADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 387
            GAD+F+ S D +Q++    +L  IIDT S  H   P + LLK  G +VL+  P + +++   +L +  ++++GS TGG K+ QEMI+F A +N+  DIE+I +DYVN A++RL   DVR+RFVIDI N+
Sbjct:  225 GADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSE-IKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVRFRFVIDIENS 352          
The following BLAST results are available for this feature:
BLAST of DY258006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CADH5_ARATH1.060e-2646.03Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH4_ARATH1.385e-2644.96Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
ADHA_BACSU4.030e-2648.82Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
CADH_MAIZE5.263e-2645.74Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_SACOF7.600e-2544.19Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
ADHC_MYCTU9.926e-2544.09NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO9.926e-2544.09NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ARATH2.888e-2444.62Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH1_ORYSJ8.402e-2444.96Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ORYSJ4.170e-2344.19Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258006 ID=DY258006; Name=DY258006; organism=Citrus clementina; type=EST; length=599bp
GGCGCTGATTCATTTTTGAATAGCCGTGACCCTGACCAATTGCAGGGTGC
TATGGGCACATTGGATGGTATTATTGACACGGTGTCCGCTGTGCACCCCA
TTTTGCCATTGGTCGGTCTATTAAAGTCCCAGGGCAAGCTTGTTCTGGTT
GGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCCTTAATTATGGG
GAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAAAGAGACGCAAG
AGATGATTGATTTTGCAGCAAAACACAATATAACAGCTGACATTGAGGTT
ATTTCGATGGATTATGTCAATACGGCAATGGAGAGGCTTGCCAAGGCTGA
TGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTTGTACGCCACCA
AACCTTGAAGAATCAAAATCAGATTGATGTCTTCAATTCACAACCTTGTT
CCATGATCCACTTTGCTATATGTAATGCTCCCTCGATCATTACACTCTTT
TAGCGCTTAAATTACTTTTAATTTCCAGTTACATCGACCCTAATTATGTC
GTGATTGCCGAAAAACTATAAATGTTAATGAAATAAAACATTGTTCATA
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