DY258008

Overview
NameDY258008
Unique NameDY258008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9856 contig Ccv1_Contig9856:4..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_DICDI (AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 73/141 (51.77%), Postives = 104/141 (73.76%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MIHF+L+ +RQGK RL+KWY+PY   E+ K+  E+  ++ +R  K  NFVE+R +++VY+RYA L+F +C+D  DNEL  LE IH +VE+LD YFG+VCELDL+FNF+K Y I+DE+ +AGEL E SK  + + +   D+L
Sbjct:    1 MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYRRYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAGELMEPSKHVILQRMEFLDNL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_NEUCR (AP-2 complex subunit sigma OS=Neurospora crassa GN=aps-2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 74/142 (52.11%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKL-CNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            M+ F+L+ +RQGK RL KWY PY+ +E+ K+  E+  ++  R  K   NFVE+R +KVVY+RYA L+FC C+D  DNEL  LE IH +VE+LD +FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:    1 MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 142          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_GIBZE (AP-2 complex subunit sigma OS=Gibberella zeae GN=APS2 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 71/142 (50.00%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKL-CNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            M+ F+L+ +RQGK RL KWY+P++ +++ K+  E+  ++  R  K   NFVE+R  K+VY+RYA L+FC C+D  DNEL  LE IH +VE+LD +FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:    1 MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 142          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP1S1_DICDI (AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLI 518
            MIHF+L  +RQ KVRL+K+YS YT  E+++  RE+   +L+R PK CNFV+WR + +VY+R+ASL+F M  D  DNEL  LE I  +V +LD  FG++CELDLI+ F +AY +LDE L+ G LQESS K + R I
Sbjct:    1 MIHFLLCFNRQSKVRLSKFYSTYTPTEKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQRFASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRAYQVLDEFLLTGHLQESSSKEILRAI 135          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_RAT (AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+RYA LYFC+C+D  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_PONAB (AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+RYA LYFC+C+D  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_MOUSE (AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+RYA LYFC+C+D  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_HUMAN (AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+RYA LYFC+C+D  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_BOVIN (AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 68/141 (48.23%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL KWY  +   E+ K+I E+  V+  R  K  NFVE+R +K++Y+RYA LYFC+C+D  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S1_MAIZE (AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.106e-37
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKA--YYILDEILIAGELQESSKK 500
            MI F+LL +RQGK RL K+Y P    E+ KV  E+  +++ R PK  NFVE+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK   Y ILDE ++AGELQE+SK+
Sbjct:    1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILAGELQETSKR 131          
The following BLAST results are available for this feature:
BLAST of DY258008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S_DICDI6.768e-4051.77AP-2 complex subunit sigma OS=Dictyostelium discoi... [more]
AP2S_NEUCR5.729e-3952.11AP-2 complex subunit sigma OS=Neurospora crassa GN... [more]
AP2S_GIBZE6.335e-3850.00AP-2 complex subunit sigma OS=Gibberella zeae GN=A... [more]
AP1S1_DICDI6.335e-3853.33AP-1 complex subunit sigma-1 OS=Dictyostelium disc... [more]
AP2S1_RAT1.081e-3748.23AP-2 complex subunit sigma OS=Rattus norvegicus GN... [more]
AP2S1_PONAB1.081e-3748.23AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S... [more]
AP2S1_MOUSE1.081e-3748.23AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s... [more]
AP2S1_HUMAN1.081e-3748.23AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S... [more]
AP2S1_BOVIN1.081e-3748.23AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 ... [more]
AP2S1_MAIZE4.106e-3756.49AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258008 ID=DY258008; Name=DY258008; organism=Citrus clementina; type=EST; length=713bp
GAGAATAATAATAACATTTAAGAGGAGAAGACAATACAGACAGCGGAAGT
GGAGCAGATAAGAATTGCATAACATATTAAAGCTGACGGGTATTTCATCA
TCAAACACAAACAATGATTCACTTTGTGCTTCTTATTAGTCGACAAGGAA
AAGTAAGGTTGACAAAATGGTATTCTCCTTATACACAGAAGGAAAGAAGT
AAGGTTATCCGTGAGCTAAGTGGTGTGATTCTTACACGAGGACCTAAGCT
CTGTAATTTTGTGGAATGGAGAGGGTACAAGGTTGTCTATAAAAGATATG
CTAGTCTATACTTCTGCATGTGCATTGATCAGGAAGACAATGAGTTAGAG
ATCCTTGAAATAATTCATCATTATGTTGAGATTCTTGACAGATACTTTGG
CAGTGTTTGTGAGTTGGACCTCATCTTCAACTTTCACAAGGCTTATTACA
TATTGGATGAGATCTTGATTGCTGGCGAACTTCAAGAGTCCAGCAAGAAA
ACAGTCGCACGGCTAATAGCTGCACAGGATTCACTGGTGGAGACTGCAAA
AGAGCAAGCTAGTTCAATAAGTAATATAATCGCACAGGCCACAAAGTAGG
ATGTACCAAGTATGTTCGTGTAATATATTGATTGAGTTTGAAGTGATTTC
TGCATTGAATTTCCTCTTCCAGTTCCTTTTCAAGAATTTAATAACATGTT
AAGAATGTATTTT
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