DY258008

Overview
NameDY258008
Unique NameDY258008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9856 contig Ccv1_Contig9856:4..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_ASPFU (AP-2 complex subunit sigma OS=Aspergillus fumigatus GN=aps2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 72/143 (50.35%), Postives = 105/143 (73.43%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKL-CNFVEW-RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            ++ F+L+ +RQGK RL KWY+PY+ +E+ K+  E+  ++  R  K   NFVE+ R  K+VY+RYA L+FC+C+D  DNEL  LE IH +VE+LD++FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:    2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 144          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_EMENI (AP-2 complex subunit sigma OS=Emericella nidulans GN=aps2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKL-CNFVEW-RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            ++ F+L+ +RQGK RL KWY+PY+ +E+ K+  E+  ++  R  K   NFVE+ R  K+VY+RYA L+FC C+D  DNEL  LE IH +VE+LD++FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:    2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 144          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP1S1_YEAST (AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae GN=APS1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 72/144 (50.00%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  111 TMIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQE-DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIA-GELQESSKKTVARLIAAQDSL 536
            T + ++LL+SRQGK+RL KWY+  +  E++K++++L+  IL R PK+CN +E+  +KVVYKRYASLYF + +  + DNEL  LEIIH +VE +D YFG+VCELD+IFNF K Y IL+E+++  G + ESS+K V   +   D++
Sbjct:    2 TQLKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKRYASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMCDGSIAESSRKEVLHHVTVMDTM 145          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_SCHPO (AP-2 complex subunit sigma OS=Schizosaccharomyces pombe GN=aps2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 73/142 (51.41%), Postives = 100/142 (70.42%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKL-CNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            MI F+L+ +R GK RL+K+Y P+   E+ ++   +  +I  R  K   NF+EW   K+VY+RYA LYFC C+D  DN+L ILE+IH +VEILD +FG+VCELDLIFNF+K   ILDEI++ GE+ ES+KK+V   I A + L
Sbjct:    1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERIEALEKL 142          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S2_BOVIN (AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 57/173 (32.95%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRG------YKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL ++Y  + ++ + +++RE   ++L R   +CNF+E         YK++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K +YIL E+++ G + E++   +   I AQ+ L ++    +++ +  ++     ++P M
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEM 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S2_PONAB (AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 56/173 (32.37%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRG------YKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL ++Y  + ++ + +++RE   ++L R   +CNF+E         YK++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K +YIL E+++ G + E++   +   I AQ+ L ++    +++ +  ++     ++P +
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S2_MOUSE (AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 56/173 (32.37%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRG------YKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL ++Y  + ++ + +++RE   ++L R   +CNF+E         YK++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K +YIL E+++ G + E++   +   I AQ+ L ++    +++ +  ++     ++P +
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S2_HUMAN (AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 56/173 (32.37%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRG------YKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL ++Y  + ++ + +++RE   ++L R   +CNF+E         YK++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K +YIL E+++ G + E++   +   I AQ+ L ++    +++ +  ++     ++P +
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNINLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S_SCHPO (AP-3 complex subunit sigma OS=Schizosaccharomyces pombe GN=aps3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 58/161 (36.02%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWR----GYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 584
            MI+ V + + +GK RLTK+Y+P  +  + K+I ++   + TR P  CNF+E        +++Y++YA+LYF   +D+ ++EL IL++I  +VE LDR F +VCELDL+F F + + IL E++  G + E++   +  ++AAQ+ + +T +  A   SN ++
Sbjct:    1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETNLNEI--VLAAQNQMPKTKRSNAMPFSNTLS 159          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S_DICDI (AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 56/164 (34.15%), Postives = 101/164 (61.59%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEW--------RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNII 581
            MI  +L+I+  GK RL K+Y  Y+++++ ++IREL  ++  R  + CNF+E         +  K++Y+ YA+L+F  C+D  ++EL I+++I  +VE LD+ F +VCELDLIF+  K +YILDE+++ G + E++   +      Q+ L +      S ++ ++
Sbjct:    1 MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDKDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHYILDEMVMGGLVLETNPTIIFSNYEIQNKLEKAENPLLSGLAGVM 164          
The following BLAST results are available for this feature:
BLAST of DY258008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S_ASPFU5.363e-3750.35AP-2 complex subunit sigma OS=Aspergillus fumigatu... [more]
AP2S_EMENI9.147e-3750.35AP-2 complex subunit sigma OS=Emericella nidulans ... [more]
AP1S1_YEAST1.195e-3650.00AP-1 complex subunit sigma-1 OS=Saccharomyces cere... [more]
AP2S_SCHPO2.661e-3651.41AP-2 complex subunit sigma OS=Schizosaccharomyces ... [more]
AP3S2_BOVIN1.912e-2632.95AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S... [more]
AP3S2_PONAB5.562e-2632.37AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP... [more]
AP3S2_MOUSE5.562e-2632.37AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP3S2_HUMAN5.562e-2632.37AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP3S_SCHPO1.618e-2536.02AP-3 complex subunit sigma OS=Schizosaccharomyces ... [more]
AP3S_DICDI2.761e-2534.15AP-3 complex subunit sigma OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258008 ID=DY258008; Name=DY258008; organism=Citrus clementina; type=EST; length=713bp
GAGAATAATAATAACATTTAAGAGGAGAAGACAATACAGACAGCGGAAGT
GGAGCAGATAAGAATTGCATAACATATTAAAGCTGACGGGTATTTCATCA
TCAAACACAAACAATGATTCACTTTGTGCTTCTTATTAGTCGACAAGGAA
AAGTAAGGTTGACAAAATGGTATTCTCCTTATACACAGAAGGAAAGAAGT
AAGGTTATCCGTGAGCTAAGTGGTGTGATTCTTACACGAGGACCTAAGCT
CTGTAATTTTGTGGAATGGAGAGGGTACAAGGTTGTCTATAAAAGATATG
CTAGTCTATACTTCTGCATGTGCATTGATCAGGAAGACAATGAGTTAGAG
ATCCTTGAAATAATTCATCATTATGTTGAGATTCTTGACAGATACTTTGG
CAGTGTTTGTGAGTTGGACCTCATCTTCAACTTTCACAAGGCTTATTACA
TATTGGATGAGATCTTGATTGCTGGCGAACTTCAAGAGTCCAGCAAGAAA
ACAGTCGCACGGCTAATAGCTGCACAGGATTCACTGGTGGAGACTGCAAA
AGAGCAAGCTAGTTCAATAAGTAATATAATCGCACAGGCCACAAAGTAGG
ATGTACCAAGTATGTTCGTGTAATATATTGATTGAGTTTGAAGTGATTTC
TGCATTGAATTTCCTCTTCCAGTTCCTTTTCAAGAATTTAATAACATGTT
AAGAATGTATTTT
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