DY258008

Overview
NameDY258008
Unique NameDY258008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9856 contig Ccv1_Contig9856:4..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S1_MOUSE (AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEW------RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL+K+Y PY++  + ++IRE   ++  R   +CNF+E          K++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K + IL E+++ G + E++   +   I AQ+ L ++    A + +  ++     ++P +
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S1_HUMAN (AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEW------RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL+K+Y PY++  + ++IRE   ++  R   +CNF+E          K++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K + IL E+++ G + E++   +   I AQ+ L ++    A + +  ++     ++P +
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S1_BOVIN (AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEW------RGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK*DVPSM 614
            MI  +L+ +  GK RL+K+Y PY++  + ++IRE   ++  R   +CNF+E          K++Y+ YA+LYF  C+D  ++EL IL++I  +VE LD+ F +VCELDLIF+  K + IL E+++ G + E++   +   I AQ+ L ++    A + +  ++     ++P +
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEI 173          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 51/144 (35.42%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVET 545
            MI F L++++QG+ RL+K+Y      +R+ +  E+S   L+R  + C+F+E++ +K++Y++YA+L+  + ++  +NE+ I E IH++VE+LD YF  V ELD++FN  K + ILDE+++ G + E+++  +   +   D L E+
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKLSES 144          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 49/144 (34.03%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVET 545
            MI F L++++QG+ RL+K+Y      +R+ +  E+    L+R  + C+F+E++ +K++Y++YA+L+  + ++  +NE+ I E IH++VE+LD YF  V ELD++FN  K + ILDE+++ G + E+++  +   +   D + E+
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKMSES 144          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP2S_YEAST (AP-2 complex subunit sigma OS=Saccharomyces cerevisiae GN=APS2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 61/144 (42.36%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  117 IHFVLLISRQGKVRLTKWYSPYTQK-ERSK-VIRELSGVILTRGPK-LCNFVEWR-GYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 536
            + F+L  ++QG VRL +W+  ++   +RS+  I ++  +I +R  K   NFVE+    K++Y+RYA LYF M +D  D+E   L  IH +VE+LD +FG+VCELD++FNF+K Y I+DE+ I GE+QE SK  +   ++  D L
Sbjct:    3 VQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEMFIGGEIQEISKDMLLERLSILDRL 146          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 50/136 (36.76%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIA 521
            MI F L++++QG+ RL+K+Y      +R+ +  E+    L+R  + C+F+E++ +K++Y++YA+L+  + ++  +NE+ I E IH++VE+LD YF  V ELD++FN  K + ILDE+++ G + E+++   AR++A
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNR---ARILA 133          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP4S_DICDI (AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 54/134 (40.30%), Postives = 90/134 (67.16%), Query Frame = 3
Query:  117 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLI 518
            I + LL++ +GK RL+++Y     +ER  +  E+    L+R    C+FVE++ YKV+Y++YA+L+F + +D  +NEL ILE+IH+YVEILD  F +V    ++FN  KA++ILDE++  G++ E SK+ +   +
Sbjct:    3 IKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIYRKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVSNGDIVEISKQHILEFV 132          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S_YEAST (AP-3 complex subunit sigma OS=Saccharomyces cerevisiae GN=APS3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 55/173 (31.79%), Postives = 94/173 (54.34%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRG-----------PKLC-------NFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 578
            MIH VL+ +++ + RL K+Y+P    ++  ++ ++  +I  R            P L        + V     +++YK YA+LYF   +D +++EL IL++I  +VE LDR F  V ELDLIFN+     +L+EI+  G + E++   V R++A+ D L + A+   S I  +
Sbjct:    1 MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFNWQTLESVLEEIVQGGMVIETN---VNRIVASVDELNKAAESTDSKIGRL 170          
BLAST of DY258008 vs. ExPASy Swiss-Prot
Match: AP3S_ASHGO (AP-3 complex subunit sigma OS=Ashbya gossypii GN=APS3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 51/167 (30.54%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  114 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVI------------------LTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQA 560
            MIH VL+ +++ + RL K+Y+P    ++  ++ ++  +I                  L+ G +  N       +++YK YA+LYF   +D +++EL IL++I  +VE LDR F  V ELDLIFN+     +L+EI+  G + E++   V +++   D L  T+ ++A
Sbjct:    1 MIHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSETIN----EDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQTLESVLEEIIQGGMVIETN---VKKIVETVDELNRTSNQEA 160          
The following BLAST results are available for this feature:
BLAST of DY258008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP3S1_MOUSE3.605e-2533.53AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap... [more]
AP3S1_HUMAN3.605e-2533.53AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP... [more]
AP3S1_BOVIN3.605e-2533.53AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S... [more]
AP4S1_MOUSE8.032e-2535.42AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap... [more]
AP4S1_HUMAN3.986e-2434.03AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP... [more]
AP2S_YEAST3.986e-2442.36AP-2 complex subunit sigma OS=Saccharomyces cerevi... [more]
AP4S1_BOVIN1.515e-2336.76AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S... [more]
AP4S_DICDI3.375e-2340.30AP-4 complex subunit sigma OS=Dictyostelium discoi... [more]
AP3S_YEAST2.342e-1631.79AP-3 complex subunit sigma OS=Saccharomyces cerevi... [more]
AP3S_ASHGO3.995e-1630.54AP-3 complex subunit sigma OS=Ashbya gossypii GN=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258008 ID=DY258008; Name=DY258008; organism=Citrus clementina; type=EST; length=713bp
GAGAATAATAATAACATTTAAGAGGAGAAGACAATACAGACAGCGGAAGT
GGAGCAGATAAGAATTGCATAACATATTAAAGCTGACGGGTATTTCATCA
TCAAACACAAACAATGATTCACTTTGTGCTTCTTATTAGTCGACAAGGAA
AAGTAAGGTTGACAAAATGGTATTCTCCTTATACACAGAAGGAAAGAAGT
AAGGTTATCCGTGAGCTAAGTGGTGTGATTCTTACACGAGGACCTAAGCT
CTGTAATTTTGTGGAATGGAGAGGGTACAAGGTTGTCTATAAAAGATATG
CTAGTCTATACTTCTGCATGTGCATTGATCAGGAAGACAATGAGTTAGAG
ATCCTTGAAATAATTCATCATTATGTTGAGATTCTTGACAGATACTTTGG
CAGTGTTTGTGAGTTGGACCTCATCTTCAACTTTCACAAGGCTTATTACA
TATTGGATGAGATCTTGATTGCTGGCGAACTTCAAGAGTCCAGCAAGAAA
ACAGTCGCACGGCTAATAGCTGCACAGGATTCACTGGTGGAGACTGCAAA
AGAGCAAGCTAGTTCAATAAGTAATATAATCGCACAGGCCACAAAGTAGG
ATGTACCAAGTATGTTCGTGTAATATATTGATTGAGTTTGAAGTGATTTC
TGCATTGAATTTCCTCTTCCAGTTCCTTTTCAAGAATTTAATAACATGTT
AAGAATGTATTTT
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