DY258012

Overview
NameDY258012
Unique NameDY258012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258012 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.314e-33
Identity = 85/258 (32.95%), Postives = 125/258 (48.45%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRN-RIGFFTTFCGKFGIQPG 863
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINK-SNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPG 264          
BLAST of DY258012 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.358e-33
Identity = 85/261 (32.57%), Postives = 122/261 (46.74%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPG 863
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F         KREIAAFFA    ET                CYI +++  + DYC    +  PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+               L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVM---------------LQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPG 283          
BLAST of DY258012 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.639e-32
Identity = 81/257 (31.52%), Postives = 118/257 (45.91%), Query Frame = 3
Query:  102 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPG 863
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N       KREIAAFFA    ET                CYI +++    DYC    +  PC    +YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+                 G+G T   ING +EC      AV  R+ ++  +C +FG+ PG
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPG 280          
BLAST of DY258012 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.994e-31
Identity = 81/252 (32.14%), Postives = 120/252 (47.62%), Query Frame = 3
Query:  120 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRN-RIGFFTTFCGKFGIQPG 863
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                       V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINK-SNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMN---------------------NVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPG 275          
BLAST of DY258012 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.215e-29
Identity = 80/253 (31.62%), Postives = 115/253 (45.45%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC----YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPG 863
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA    ET               +CYI ++   + DYC        PC     Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  G
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATG 265          
The following BLAST results are available for this feature:
BLAST of DY258012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE4.314e-3332.95Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ7.358e-3332.57Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.639e-3231.52Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE8.994e-3132.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU2.215e-2931.62Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258012 ID=DY258012; Name=DY258012; organism=Citrus clementina; type=EST; length=1130bp
GACACCAAGTAAAGGATTTTTGATATCATAACTCTTGCTTTCAAATGAGG
CTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGG
AGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATA
CTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAG
ATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAG
AGGCTTCTACACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAG
CCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCC
TTTTTTGCCCAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACC
TGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCC
CTGCGTCCGACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAA
TACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAG
GTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTG
CCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACT
GCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAA
ACCATCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAA
CCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGAC
GCTGTACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGG
GATTCAGCCTGGGTGACAATCTTTGATTGCTACAACCCACCGGCCTTTAG
GGCCTTTATCCTGAATGGCACAATCCATTGTGATCATCCAGGAATCAAGG
TTTTTAGTTAAAATAAACCTTTAAAAAAAGCTACCCCAAATAAAAACTTT
TAAAATGGTACCAATTTGTAAGGGGGGACCAACTAAATTTTTTCCGTTTT
GTTTACCCTCCTTTTTGGCAAAGAAAAATTAAAAAAAAAAACTGGAACCC
AACCATGGGATATAAGGGGAGTTCTTTCCC
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