DY258013

Overview
NameDY258013
Unique NameDY258013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:551..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.077e-34
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PFG
Sbjct:  216 ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFG 315          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.406e-34
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   55 TDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PSA D+ AGR+PGYG+ TNIINGGIECGQG  N A  +RIGF+  +C   G   G NLDCY Q+PFG
Sbjct:  231 TDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFG 330          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.406e-34
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR  GYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  195 SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.132e-34
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS+ D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  217 ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.132e-34
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  211 ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.091e-34
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD ++SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  209 ATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  211 ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.190e-33
Identity = 61/108 (56.48%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  ++
Sbjct:  221 ATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.555e-33
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 375
            AT+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W PSA D  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG N+DC +Q+ F   L+  +M
Sbjct:  227 ATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.555e-33
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATD  +SFK+A+WFWMT Q  KPS H+VIT  W PS  D  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  231 ATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
The following BLAST results are available for this feature:
BLAST of DY258013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI5_PHAVU1.077e-3465.00Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI6_POPTR1.406e-3466.00Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_GOSHI1.406e-3461.00Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_TOBAC3.132e-3458.33Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_SOLTU3.132e-3459.26Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU4.091e-3461.00Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU5.343e-3462.00Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU1.190e-3356.48Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_TOBAC1.555e-3359.26Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_ORYSJ1.555e-3362.63Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258013 ID=DY258013; Name=DY258013; organism=Citrus clementina; type=EST; length=532bp
GGAGAAGACCTAGGGCTTGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATG
ACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGG
CCTTATTCTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAA
GACTGATCCAACATGGATCAATGAGTCTTCTC
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