DY258013

Overview
NameDY258013
Unique NameDY258013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:551..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.652e-33
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            A+D  +SFK+A WFWMT Q PKPSCH VIT +W PSA+D  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+Q+P+
Sbjct:  219 ASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLI 357
            + DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS  D  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCY+Q+ F  +
Sbjct:  213 SNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSFASV 314          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.523e-33
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            A+D  +SFK+A WFWMT Q PKPSCH V+T +W P+ ND  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  223 ASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.716e-33
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG NLDCY+Q+ FG
Sbjct:  152 ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.716e-33
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PG NLDCY Q+ F
Sbjct:  146 ATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 7.716e-33
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  219 ATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.245e-32
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  167 ATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.932e-32
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            A+D  +SF +A WFWMT Q PKPSCH V T +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY Q+PFG
Sbjct:  226 ASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.829e-32
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G NLDCY+Q+PF
Sbjct:  222 ATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of DY258013 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.001e-32
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            +TD V+SFK+AIWFWMTAQ  KPSCH+VI   W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCY+Q+ F
Sbjct:  161 STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
The following BLAST results are available for this feature:
BLAST of DY258013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI3_ORYSJ2.652e-3360.61Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA3.463e-3357.84Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_ORYSJ4.523e-3358.59Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC7.716e-3362.00Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC7.716e-3362.63Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_HORVU7.716e-3360.6126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE2.245e-3260.61Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI12_ORYSJ2.932e-3259.00Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SECCE3.829e-3259.60Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI8_ORYSJ5.001e-3262.63Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258013 ID=DY258013; Name=DY258013; organism=Citrus clementina; type=EST; length=532bp
GGAGAAGACCTAGGGCTTGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATG
ACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGG
CCTTATTCTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAA
GACTGATCCAACATGGATCAATGAGTCTTCTC
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