DY258015

Overview
NameDY258015
Unique NameDY258015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:154..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_VANPO (Nascent polypeptide-associated complex subunit alpha OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 1
Query:  145 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT-------------QAAEQFKVPPPNTGNVASKPESSAMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 537
            KLG+K I G++RVT +K  N +F I  P+V++S   + Y+VFGEAKI++ S +L               +  +  ++     G+ ++KP ++A   D+  VD   +  +DIELV +QA V +++A+KALK  +GDIV+AIM L+
Sbjct:   26 KLGLKKIAGINRVTFRKKDNQIFAIDNPEVYRSQGGN-YVVFGEAKIDNFSQKLAAAQEKIQSVSKSPEEIQKDMQLAADQAGDESAKPAAAAEEDDEAPVDAGDLSAEDIELVASQANVSKNKAIKALKEHNGDIVNAIMALS 168          
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  145 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDEK--VDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 537
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDE+  VD   +   DIELV+ Q  V +++A+KALKA +GD+V+AIM L+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 58/149 (38.93%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  145 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDEK--VDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 537
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDE+  VD   +   DIELV+ Q  V +++A+KALKA +GD+V+AIM L+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_YARLI (Nascent polypeptide-associated complex subunit alpha OS=Yarrowia lipolytica GN=EGD2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 55/158 (34.81%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  145 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ--AAEQFKVPPPNTGNV-------------ASKPESSAM-------------VQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL 534
            KL ++ + G++RV +K+++  +FVI+ P+V+K+PT ++Y+VFGEA+ ED+ +  +    AA Q +     TG+V             ASK  +S                +D+ + D TG+E  DI+LVM QA V R++A+  LK  D D+V+ IM+L
Sbjct:   39 KLNLQKVEGITRVVLKRTRQHIFVIANPEVYKTPTGNSYVVFGEAQHEDMQATARAAQIAAAQAQQAAAETGSVSEAAAAGEVGAELASKDPASITADLEAASLSKDEDAEDEAEADATGLEDSDIKLVMEQANVSRNKAINGLKKNDSDVVNTIMDL 196          
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  136 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ----------------FKVPPPNT---------GNVASKPESSAMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL 534
            A+  LG+K + G+ RVT+++++N+L V+S P+V+KSP SD YIVFGEAK+ED +S  Q QA  Q                FK   P +            +S P  S    D     +  V  ++I+L++ Q GV  ++A +A  +  GD+++AIM+L
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQAQAQLAASSQAAQQAHAHGGFKEGVPKSLEELMQDAPSTDSSAPAPSGEATDASASGDFKVSDEEIQLIVAQTGVDEAKAREAYISEKGDLINAIMKL 190          
BLAST of DY258015 vs. ExPASy Swiss-Prot
Match: NACA_CANGA (Nascent polypeptide-associated complex subunit alpha OS=Candida glabrata GN=EGD2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  145 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQL---QTQAAEQFKVPPPNTGNVASKPESSAMVQD--------DEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 537
            KLG+K +PG+ RVT +K  N +F I KP+VF+S     Y+VFGEAK+++ + +L   Q QA  Q     P   ++ +  +++A+  +        +E VD   +   DI+LV+ Q    + +A+KALK  +GDIV+AIM L+
Sbjct:   26 KLGLKKVPGIIRVTFRKKDNQIFAIEKPEVFRS-VGGNYVVFGEAKVDNFTQRLAAAQQQAQSQTATKTPE--DIQADMQAAAVANENKTEGDAAEEDVDAGDLSNDDIDLVVQQTNATKGQAIKALKEHNGDIVNAIMSLS 164          
The following BLAST results are available for this feature:
BLAST of DY258015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_VANPO6.987e-2037.50Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAST9.125e-2038.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS79.125e-2038.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_YARLI3.467e-1934.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_CRYNE2.248e-1834.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANGA5.007e-1837.32Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258015 ID=DY258015; Name=DY258015; organism=Citrus clementina; type=EST; length=671bp
GTAGTCGAGGACGACGTTGATGAGGATGATGATGAGGAGGATGAGGATGA
TGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAGTGGTCGCT
CAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGTTGAAACTT
GGAATGAAGCCAATCCCTGGCGTCAGTCGAGTTACAGTTAAAAAGAGCAA
AAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAGTCCTACAT
CTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATCTGAGTTCA
CAACTGCAAACTCAGGCTGCAGAGCAGTTCAAGGTCCCTCCTCCTAACAC
AGGTAATGTGGCATCAAAGCCTGAGTCATCGGCCATGGTTCAAGATGACG
AAAAAGTAGATGAGACTGGTGTGGAGCCAAAGGACATTGAGTTGGTAATG
ACTCAAGCTGGGGTACCGAGGTCAAGGGCTGTGAAAGCACTCAAAGCCGC
AGATGGTGACATCGTTTCTGCCATTATGGAGCTAACAAATTGATGGTCAC
TTTCTTAATTATGTTGCTCTGCTGAATGATCCCATAAGGAAATCTTTTTT
TTTTTTTTTCTCGCTGTTACCATTTACAATTGAAGTTGCAGATTTTTGCT
GGCTTTATAACTTTTCTCTCT
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