DY258017

Overview
NameDY258017
Unique NameDY258017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258017_ssr3 microsatellite DY258017_ssr3:3..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9851 contig Ccv1_Contig9851:7..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 35/112 (31.25%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   82 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVP 417
            +K++   EV KH++ D  W+++ G +Y+ T FL+DHPGG + +L     D T++F+ + HSD A++++E + IGE+ ++   +      P  +V+      S    ++ LVP
Sbjct:  531 SKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGELITTGYTS----DSPGNSVHGSSSFSSFLAPIKELVP 637          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 35/113 (30.97%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   82 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPM 420
            +K++   EV KHN+ D  W+++ G +Y+ + FL+DHPGG + +L     D T++F+ + HSD A++++E + IGE+ ++   +    + P  +V+       ++ I  FL P+
Sbjct:  536 SKMYSMSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGELITTGYTSD---SSPNSSVH------GSSSISSFLAPI 638          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.627e-13
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  103 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSP-EDTGSAAKILQFLVP 417
            EV KH ++D  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+E+++ Y IG++ ++    +R  +P + A + P    G AA ++    P
Sbjct:  527 EVRKHASQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKELLDTYRIGDLVTTGGAEQR--SPLELAPSPPIRHEGPAAPVIALSNP 629          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA_PHYIN (Nitrate reductase [NADPH] OS=Phytophthora infestans GN=NIAA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.301e-12
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  103 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSS 318
            EVAKHN++  CW +    VY+ TPFL++HPGG   +L     D TD+FE + HS  A +M++KY IG   S+
Sbjct:  544 EVAKHNSKKSCWFICRDLVYDATPFLDEHPGGATSILLCGGTDCTDEFESI-HSTKAWQMLKKYCIGRCSST 614          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   82 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI--DSSSVPAKRKYTP-PQQAVNS 369
            AK     EV  H   +  W V+ GKVY+ TPFL+DHPGG + +L     DATD+F  + HS  A++ + +Y+IGE+  +     A  + TP P  A+ +
Sbjct:  216 AKSFTMAEVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAI-HSLKAKKQLLEYYIGELAEEGQEAAASDRATPGPAAAIGT 313          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   85 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDV-GHSDSAREMMEKYHIGEIDSSSVP 327
            K + + E+AKHN  +DCW+ + GKVY++T ++  HPGG EVLL A  +D T+ FE     SD    +++ Y IG I S   P
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHP 95          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   85 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 309
            K     EV KH+++D  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+ +++ Y IGE+
Sbjct:  542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA_BEABA (Nitrate reductase [NADPH] OS=Beauveria bassiana GN=NIA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 29/82 (35.37%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   76 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSS 321
            ++ ++   +E+  H    + W V++G VYN TP+L++HPGG   ++ A  +DAT++F  + HS++A+ MM +YHIG ++ ++
Sbjct:  533 KVVRIISLEELKAHEGEMEPWFVVNGHVYNGTPYLDNHPGGATSIINAAAQDATEEFMTI-HSENAKAMMPQYHIGTLNDAA 613          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   85 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 309
            K     EV KH +++  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+ +++ Y IGE+
Sbjct:  536 KQFTMSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 609          
BLAST of DY258017 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   85 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 309
            K     EV KH +++  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+ +++ Y IGE+
Sbjct:  539 KQFTMSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 612          
The following BLAST results are available for this feature:
BLAST of DY258017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
NIA2_TOBAC3.424e-1331.25Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA_SOLLC4.471e-1330.97Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA3_MAIZE7.627e-1335.85Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA_PHYIN1.301e-1245.83Nitrate reductase [NADPH] OS=Phytophthora infestan... [more]
NIA_CHLVU1.699e-1238.38Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]
FAD5A_DICDI1.699e-1242.68Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
NIA1_ORYSJ2.219e-1241.33Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA_BEABA2.898e-1235.37Nitrate reductase [NADPH] OS=Beauveria bassiana GN... [more]
NIA2_HORVU4.944e-1240.00Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_HORVU4.944e-1240.00Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258017 ID=DY258017; Name=DY258017; organism=Citrus clementina; type=EST; length=641bp
AGGTCTGTCTGTCTGTCTGTCTGCAAGCTCCTATAATTCTGATTCTGCGT
GAGCAGTATTTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATGATTTTC
AAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTAATTTCT
GGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGGTGGTGA
TGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACTTTGAAG
ATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATACCACATT
GGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACACTCCACC
CCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAAAGATTC
TACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCTTTCCGT
TACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAAACCGAA
CCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAGAACTTC
AATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGTGTAGCA
ATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGA
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