DY258025

Overview
NameDY258025
Unique NameDY258025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9866 contig Ccv1_Contig9866:10..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SRP19_DROME (Signal recognition particle 19 kDa protein OS=Drosophila melanogaster GN=Srp19 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  142 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ----RGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 459
            +++W+ +YP YIN KKT  EGRR+      +NP+ IEI D      +   +E +K Y R+       RGRVRV L+  DGT  N    +R+ +MLH+A  +P+   R  K
Sbjct:   20 MERWICIYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLME-NKKYCRENSSEMEFRGRVRVQLRNVDGTLYNNDFPTRESIMLHIASKIPQLKTRQNK 128          
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SRP19_DICDI (Signal recognition particle 19 kDa protein homolog OS=Dictyostelium discoideum GN=srp19 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  145 KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV--NPAISSRKQLMLHVAELVPR-HPNRTKKQEPAS 474
            KKW I+YP +INS+ T  +GR++S     +NPT  EIA+    L +P  IE  K YP++F  RGR+R+     DGT +  NP I ++  L++ +AE +   +PNR +   P S
Sbjct:   18 KKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQLGLPCIIETSKGYPKEFFLRGRLRINFFC-DGTTMPRNPHIPNKTVLLVKIAERIKLINPNRPEPFNPIS 129          
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SEC65_KLULA (Signal recognition particle SEC65 subunit OS=Kluyveromyces lactis GN=SEC65 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  142 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHP 444
            IK++ +LYP Y ++++T A+GRR       ENP    IAD  + L IP   E  K +P+DF   GRVRV++K     FV+  I +++ LM  + E +  HP
Sbjct:   88 IKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQDFGNPGRVRVLIKENGKPFVS-GIDNKRVLMKRIGEYLKSHP 187          
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SEC65_CANGA (Signal recognition particle SEC65 subunit OS=Candida glabrata GN=SEC65 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  142 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPA---ISSRKQLMLHVAELVPRHP 444
            +KK+ +LYP Y +  ++  EGRR+    A ENP    I+D  +   +    E DK +P+DF   GR+RV+LK E+G  V  A      ++QLM  VAE + +HP
Sbjct:   86 VKKFQVLYPCYFDKNRSHKEGRRVPIEMAVENPLAKTISDAVREYGLLSIFEGDKCHPQDFGNPGRIRVLLK-EEGKLVPSASKFSGGKRQLMKLVAEYLQKHP 188          
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SEC65_ASHGO (Signal recognition particle SEC65 subunit OS=Ashbya gossypii GN=SEC65 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  136 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHP 444
            A +K++ ILYP Y +  +T A+GR++    A  NP    IAD C+ L++    E +K +P+DF   GRVRV+LK E+G       ++++ LM +VA+ +  HP
Sbjct:   85 ADLKRFQILYPCYFDKNRTHAQGRQVPLELAVANPLAKTIADACRELEVLCVFEGEKTHPQDFGNPGRVRVLLK-ENGKAAG-KYANKRWLMKNVAKYLQEHP 185          
BLAST of DY258025 vs. ExPASy Swiss-Prot
Match: SEC65_YEAST (Signal recognition particle subunit SEC65 OS=Saccharomyces cerevisiae GN=SEC65 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  142 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPAI---SSRKQLMLHVAELVPRHP 444
            +K++ +LYP Y +  ++  EGRR+    A ENP    +AD  + L I    E +K +P+DF   GR+RV+ K E+G  +  A      ++QLM  V E + RHP
Sbjct:   95 VKRFQVLYPCYFDINRSHKEGRRVPKELAVENPLAKTMADAVRELGILCIFEGEKCHPQDFGNPGRIRVLFK-ENGQLIGAATKFKGGKRQLMKAVGEYMKRHP 197          
The following BLAST results are available for this feature:
BLAST of DY258025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SRP19_DROME2.388e-1438.18Signal recognition particle 19 kDa protein OS=Dros... [more]
SRP19_DICDI6.949e-1439.82Signal recognition particle 19 kDa protein homolog... [more]
SEC65_KLULA7.683e-1338.61Signal recognition particle SEC65 subunit OS=Kluyv... [more]
SEC65_CANGA6.504e-1238.46Signal recognition particle SEC65 subunit OS=Candi... [more]
SEC65_ASHGO8.495e-1237.86Signal recognition particle SEC65 subunit OS=Ashby... [more]
SEC65_YEAST5.506e-1136.54Signal recognition particle subunit SEC65 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CG03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258025 ID=DY258025; Name=DY258025; organism=Citrus clementina; type=EST; length=744bp
GAGAGGAATGTTTAATTTTTTTTGACAAAATATAAAAATACAACATAAAT
TAACGCCTGTTTCGTTCCTACTGAAGAACAGCAAAGGATCAAGGGTTTAT
ATCAGATTTGGATAGGAGAGATGGATGCGCAAACAGCTCGTATAAAGAAG
TGGGTAATATTGTATCCCGTTTACATAAATTCAAAGAAAACTATTGCTGA
AGGAAGGCGTATTAGCGCCAGCAAAGCATGTGAAAACCCCACTTGTATCG
AAATTGCTGATTGTTGTCAGTATTTGAAAATCCCTCACGCCATTGAGATT
GATAAGGCCTATCCACGGGATTTTATGCAAAGAGGTAGAGTGAGGGTGAT
GCTGAAAAGGGAAGATGGGACTTTTGTCAATCCAGCCATTTCTTCAAGGA
AACAGCTGATGCTTCATGTTGCAGAATTGGTACCAAGACATCCTAATAGG
ACTAAGAAGCAAGAGCCTGCATCCACATCTTCAAATGCCGGTCCCTCCAA
ATCCGGGAAAGGTGGAAAAAAGAAGAGATAGATTTAGCATTCCATATGTA
TTGAATCCAAAGTTATTGTTCTTGTTGCCCAATTCCCCCAAACGTTCCCT
TTCTTCAGTTGTAACATTCTTGTTGGTTGGTTTACCTTAGTTGTTTTCAG
AAGAGTTCATTTCAGCCGACAACTTTTAACTTTGGAAACCTTTAAAATAC
TCTTTGGATTCTTCATTATCAGTTTACATGTAATCCATTTAGTG
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