DY258027

Overview
NameDY258027
Unique NameDY258027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.088e-63
Identity = 122/255 (47.84%), Postives = 157/255 (61.57%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G+  TI TG+ +  +   TF +AT A  G+GF+  D+ F+NT GP+K  AVALRV  D+S  Y C +  YQD LY H +RQF+  C I GTVDFI GNAAAV Q C I AR+PN GQ N +TAQ R   +  +G  IQ   I A+SDL     +  TYLGRPW+ +S   ++QS I DL+ PAGW  W+G   L+TL Y E+QN G GA TS RVKW GF+V+    +A  FT    + G +WL  +  P+  GL
Sbjct:  272 GQDSTIITGNLSASNVRRTFYTATFASNGKGFIGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSNFITAQSRETKDDKSGFSIQNCNITASSDLD--TATVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKESRIPYKSGL 524          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.133e-62
Identity = 121/255 (47.45%), Postives = 156/255 (61.18%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G+  TI TG+ +  +   T+ +ATVA  G GF+  D+ F+NTAGP+K  AVALRV  D+S  Y C +  YQD LY HS+RQF+  C I GTVDFI GNA AV Q C I AR+P  GQ N++TAQ R   +  +G  IQ   I  +SDL     +  TYLGRPW+ +S   ++QS I DL+ PAGW  W G   L+TL Y E+QN G GA TS RVKW GF+V+    +A  FT    + G +WL  +  P+  GL
Sbjct:  245 GQDLTIITGNLSASNVRRTYNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSRATKDVKSGFSIQNCNITTSSDLD--TATVKTYLGRPWRRFSTVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGETWLKESRIPYESGL 497          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.219e-61
Identity = 118/247 (47.77%), Postives = 156/247 (63.16%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNF--ALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAG-SSWL 737
            GR +TI +GS N+VDG  TF ++T A  G+GF+ +D+   NTAGP KHQAVA R  +D S +Y C    YQDTLY HSNRQ++ NC + GTVDFIFG    V Q C I  R+P   Q N +TA+G  + NQNTGI I +  I    ++     +  TYLGRPWK +S+TVIMQS I   ++PAGW  W+  +     T+FY E++NSG G+  S RVKW G++ I+S  EA  FT   F+ G  +W+
Sbjct:  717 GRDKTIISGSTNMVDGVRTFNTSTFATEGKGFMMKDMGIINTAGPEKHQAVAFRSDSDRSVYYRCSFDGYQDTLYTHSNRQYYRNCDVTGTVDFIFGAGTVVFQGCSIRPRQPLPNQFNTITAEGTQEANQNTGISIHQCTISPNGNV-----TATTYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWI 958          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.265e-60
Identity = 121/252 (48.02%), Postives = 155/252 (61.51%), Query Frame = 3
Query:    6 GRTRTIFTGSRNV-VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI----HARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSD-LKLVQGS---FPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSW 734
            G  +T+ TGS N  + G TT+ +ATV VVG+GF+ARD+TFQNTAGP  HQAVA R  +D S   NC+ L  QDTLY H  RQF+ NC I G VDFIFGN+AAV Q+C+I        P  G+KN VTAQGR DP+Q+TG V     I  T + +KL + +      +LGRPWK+YSRTV +  ++  LI P GW  W G+FAL TL+YGE +N+G G+  S RV W              ++  +FI    W
Sbjct:  298 GMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSS---QIPDEHVHVYSVANFIQADEW 546          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.613e-59
Identity = 122/260 (46.92%), Postives = 157/260 (60.38%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFI------AGSSWLGSTGFPFSLG 767
            G T+T FTGS N  DG  T+ +AT  V G  F+A+DI F+NTAG  KHQAVALRV AD + FYNC M  +QDTLYV S RQF+ +C I+GT+DF+FG    V QNC +  R P  GQ+ +VTA GR   N  + +V Q S       L  V     +YLGRPWK+YS+ VIM S+I  +  P G+  W G+    T  Y E+ N G GA T+ RVKW G +V+TS   A+ + PG F       A  +W+  +G P+SLG
Sbjct:  188 GPTKTKFTGSLNYADGINTYNTATFGVNGANFMAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAE-YYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.212e-58
Identity = 118/257 (45.91%), Postives = 155/257 (60.31%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVD-GSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI-----HARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSD-LKLVQGS---FPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 746
            G  +T+ TGS NV   G TTF+SATV V+G+GF+ARD+T +NTAG   HQAVA R  +D S   NC+ L  QDTLY HS RQF+  C I G VDFIFGN+AAV Q+CDI     H++    G  N +TA GR D +Q+TG V     I  T + +K  Q +      +LGRPWKE+SRTV +  ++  LI P GW  W+G+FAL TL+YGE++N+G G+  S RV W              ++  +FI    W  +T
Sbjct:  348 GMGKTVITGSLNVGQPGMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSS---EIPEKHVDVYSVANFIQADEWASTT 601          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.640e-53
Identity = 104/226 (46.02%), Postives = 142/226 (62.83%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEW--DGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVI 674
            G+  T+  G  +   G++   +AT+ V G+GF+ARDI  +N AGP  HQA+AL + +D S  Y C +  YQDTLY  + RQF+  C I GT+DFIFGNAAAV Q+C+I  R+P+  +  N++ A GRTD  QNTG  +   RI   SDL  V+  + +YLGRPW++YSR ++M+S I D I   GW  W   G+  L TL++GE +N G  A  S RV W+GF  I
Sbjct:  254 GKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSI 479          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.142e-53
Identity = 115/258 (44.57%), Postives = 153/258 (59.30%), Query Frame = 3
Query:    6 GRTRTIFTGSRNV--VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQ-NTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G T+TI T  R+V    G+TT  S TV V  EGF+A+ I FQNTAGP  HQAVA RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK + GQ N VTA G         GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I DLI P GW+EW G     T  Y E  N G GA T+ RV W   ++  SA E + FT  +++  ++W+     P  LGL
Sbjct:  329 GATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.234e-53
Identity = 113/258 (43.80%), Postives = 153/258 (59.30%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQG-RTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G  +T+ + +R+V    G+TT  SATV V  EGF+A+ + F+NTAGP  HQA A+RV  D +  +NC    YQDTLYV++ RQF+ NC+++GTVDFIFG +A V+QN  I  RK + GQ N VTA G         GIV+Q  RI     L   + +  TYLGRPWK++S TVIM + + DLI P GW  WDG     +  Y E+ N G GA  + RV W   +V  SA E   FT  +++   +W+     P ++GL
Sbjct:  333 GARKTVISYNRSVALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.063e-52
Identity = 115/258 (44.57%), Postives = 153/258 (59.30%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQG-RTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G T+TI T  R+V    G+TT  S TV V  EGF+A+ I F+NTAGP  HQAVALRV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK + GQ N VTA G         GIV+   RI    +L+  + +  +YLGRPWK+++ TVI+ + I DLI P GW EW G     T  Y E  N G GA T+ R  W   +V  SA E + +T  +++  ++W+     P  LGL
Sbjct:  333 GATQTIITFDRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
The following BLAST results are available for this feature:
BLAST of DY258027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME42_ARATH5.088e-6347.84Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME30_ARATH1.133e-6247.45Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME26_ARATH6.219e-6147.77Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME51_ARATH5.265e-6048.02Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_MEDSA2.613e-5946.92Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME64_ARATH2.212e-5845.91Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME54_ARATH1.640e-5346.02Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_BRANA2.142e-5344.57Probable pectinesterase/pectinesterase inhibitor O... [more]
PME4_ARATH6.234e-5343.80Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME37_ARATH1.063e-5244.57Probable pectinesterase/pectinesterase inhibitor V... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CG07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258027 ID=DY258027; Name=DY258027; organism=Citrus clementina; type=EST; length=924bp
GCGGGGGAAGGACTAGAACTATCTTCACAGGAAGTAGAAATGTGGTTGAT
GGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATT
CTTGGCCCGAGACATTACGTTCCAAAACACAGCAGGCCCCTCAAAGCACC
AGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGC
GATATGTTAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTT
CTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATG
CTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCC
GGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAA
CACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAA
AACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAG
TACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACCC
TGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGTTTT
ACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGAGTG
AAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGCTTT
TACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTGGTT
TCCCATTCTCCCTTGGTTTGTAATATTCACTANGAGTTTTAATTAATATG
TTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAATTTGTAATATTT
GGATTGACCGTGTCTTATTCGTGGCTTCCATCTCACAAATACTATTGTGT
GATTTACAAGAATTAAAATAACCC
back to top