DY258027

Overview
NameDY258027
Unique NameDY258027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.336e-22
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T  SA++ ++ + F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G+  + RV    F       EA  F    +I GS WL
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 66/231 (28.57%), Postives = 109/231 (47.19%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T  SA++ ++ + F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G+  + RV    F       EA  F    +I GS WL
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.707e-22
Identity = 68/231 (29.44%), Postives = 112/231 (48.48%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T  SAT+ V+ + F+A +I  +N+A    G  K  QA+++R+  + +AFYNC    YQDT+   +   FF +C I GT DFIFG+  ++     ++          ++TA       + +G      ++  T            YLGR W  + + V   + ++ +++P+GW E        T+FYGE++ +G G+    RVK   +       EA+ F    +I GSSWL
Sbjct:  116 TVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGI---RVITAHAGKSAAEKSGYSFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVK---YTQDIDDIEAKYFISLGYIQGSSWL 332          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 72/249 (28.92%), Postives = 105/249 (42.17%), Query Frame = 3
Query:   48 DGSTTFKSATVAVVGEGFLARDITFQNTAG--PSKHQ----AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKN---MVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLG 767
            D   T  SAT     +  +   ITF+NT    P+  +    AVA R+  D     +   +  QDTL+    R ++  C+I+G +DFIFG   ++ + C ++         N    +TA  R  P+   G V              V G   T LGR W   +R +  +S ++D++ P GW  W        L + E   +GAGA TS RV W       S +E   F   SFI    W+  + FP   G
Sbjct:  101 DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCT---------VTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW---LKKLSLSEVDGFASVSFIDQDGWI--SRFPIEGG 335          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 49/108 (45.37%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI 329
            G+  TI T + +  +   TF +AT A  G+GF+  D+ F+NT  P K   V LRV  D+S  Y C +  YQD LY H NRQ +    +  TVDFI GNAAAV Q C I
Sbjct:  134 GQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 84/262 (32.06%), Postives = 120/262 (45.80%), Query Frame = 3
Query:   48 DGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW--------------KEYSRTVIMQSSITDLIHPAGWHEWDGNFAL-NTLFYG-------EHQNSGAGAGTSGRVKWKGFRVITSATEAQ 695
            DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDRRQLTDAQAAE 351          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.894e-17
Identity = 84/262 (32.06%), Postives = 120/262 (45.80%), Query Frame = 3
Query:   48 DGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW--------------KEYSRTVIMQSSITDLIHPAGWHEWDGNFAL-NTLFYG-------EHQNSGAGAGTSGRVKWKGFRVITSATEAQ 695
            DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDAQAAE 351          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.973e-12
Identity = 72/246 (29.27%), Postives = 98/246 (39.84%), Query Frame = 3
Query:    3 GGRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK--NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKE--------------YSRTVIMQSSITDLIH--------PAGWHEWDGNFALNTLFYGEHQNSGAGAG 635
            G +T      S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTL+V +       R +F N  I G  DFIFG   AV   C I       G K  + + A   T P    G +   S   AT +      +   +LGR W +                + VI  SS+  LI          AG      N A +   + E+ N+GAG+G
Sbjct:  157 GAKTNPCMGTSSNATVG--TLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGAKAASYIFAPS-TAPGNPYGFLAINSTFNATGN----PPNNSLHLGRAWDQSVSGTSAYINGSSPNGQVVIRDSSLGALIRLADPWGPSTAGRPYCSANCAYSANRFFEYNNTGAGSG 395          
BLAST of DY258027 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.650e-11
Identity = 69/245 (28.16%), Postives = 95/245 (38.78%), Query Frame = 3
Query:    3 GGRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKE--------------YSRTVIMQSSITDLIH--------PAGWHEWDGNFALNTLFYGEHQNSGAGAG 635
            G +T      S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTLY+ +       R +F N  I G  DFIFG   AV   C I       G +         T P+   G +   S   AT +      +  T+LGR W +                + VI  SS+   I          AG        A +   + E+ N+GAG+G
Sbjct:  157 GAKTNPCMGTSSNATVG--TVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYLGATNNTMVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGARATSYVFAPSTAPDNPHGFLAINSTFNATGN----ASNNSTHLGRAWDQGVSGTSAYINGSSPNGQVVIRDSSLGAHIRLADPWGPSTAGRPYCSSKCAYSANRFFEYNNTGAGSG 395          
The following BLAST results are available for this feature:
BLAST of DY258027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME48_ARATH3.336e-2228.57Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH4.357e-2228.57Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME63_ARATH9.707e-2229.44Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME66_ARATH1.312e-1828.92Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PME57_ARATH2.238e-1845.37Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.111e-1732.06Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD31.894e-1732.06Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME1_RALSO6.973e-1229.27Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME2_RALSO2.650e-1128.16Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CG07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258027 ID=DY258027; Name=DY258027; organism=Citrus clementina; type=EST; length=924bp
GCGGGGGAAGGACTAGAACTATCTTCACAGGAAGTAGAAATGTGGTTGAT
GGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATT
CTTGGCCCGAGACATTACGTTCCAAAACACAGCAGGCCCCTCAAAGCACC
AGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGC
GATATGTTAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTT
CTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATG
CTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCC
GGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAA
CACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAA
AACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAG
TACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACCC
TGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGTTTT
ACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGAGTG
AAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGCTTT
TACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTGGTT
TCCCATTCTCCCTTGGTTTGTAATATTCACTANGAGTTTTAATTAATATG
TTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAATTTGTAATATTT
GGATTGACCGTGTCTTATTCGTGGCTTCCATCTCACAAATACTATTGTGT
GATTTACAAGAATTAAAATAACCC
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