DY258031

Overview
NameDY258031
Unique NameDY258031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1285
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANOM (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.917e-13
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   80 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:    3 ALVKRETNKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTMGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.727e-13
Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE  G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +P E AA     G  V+ AL
Sbjct:   23 PVPE---VGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSA-VTKYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: DOIAD_STRFR (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces fradiae GN=neoA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.727e-13
Identity = 51/149 (34.23%), Postives = 72/149 (48.32%), Query Frame = 2
Query:   80 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPI 526
            A VF+     +   +D P P      PGE LVRV Y+ VC +DL  +KG W      P+V GHE +G +V +      +L VG+NV +  L  SC  C +C  G    C      G++ DG   +Y      ++ P+PD LPL  A  +
Sbjct:    3 ALVFEAPERAVLTHRDIPAPA-----PGEALVRVAYNSVCGSDLSFYKGVWHGFT-YPVVPGHEWSGSVVDVNGPRGADL-VGRNV-VGDLTCSCGTCAHCAAGTPTLCEDLGELGFTRDGACAEYMTVPVANLRPLPDTLPLRTACQV 143          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 53/150 (35.33%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  116 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            +++D PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMEDVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 67/224 (29.91%), Postives = 93/224 (41.52%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVD------------------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 760
            + GEVL+R  ++GVCHTD     G  P +   P+V GHEGAG +VA+G+G L ++K G +V I      C +CE CR G    C      Q  G   D                   TF +Y+V     +  I      EQ   + C   T   A+ N +K + G                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   35 RKGEVLIRNTHTGVCHTDAFTLSGSDP-EGVFPVVLGHEGAGVVVAVGEGVL-SVKPGDHV-IPLYTAECGECEFCRSGKTNLCVSVRDTQGKGLMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIK 255          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 61/238 (25.63%), Postives = 100/238 (42.02%), Query Frame = 2
Query:   98 HNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQ-CSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFV----DFEDHSDPEKFIKAIKDMCD 790
            H AN   ++  PVP+  D    EVL+++D  G+C +D+  +         +  P+V GHEGAG +V +GD  +++L+VG  V I+     C  CE C+ G    C + + CS     G   +Y    A     +PD L +E+ A +    + ++ A   +K   G                    A    ++I  D    +       GAD  +    ++ D    EK +K + D  D
Sbjct:   10 HGANDVRIEKIPVPEIND---DEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGD-KVSSLRVGDRVAIE-PTQPCRSCELCKRGKYNLCVEPRYCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIH-ACNRAKITLGSKIVILGAGPIGILCAMSAKAMGASKIILTDVVQSRLDAALELGADNVLLVRREYTDEEVVEKIVKLLGDRPD 241          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH_SULSR (NAD-dependent alcohol dehydrogenase OS=Sulfolobus sp. (strain RC3) GN=adh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDW-------PAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIK-WLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVD 733
            +KD  +P+    K  +VL++V+ +GVCH+D+H  +G +           +LP+  GHE AG I  +GD  +   K G  V +  W  +   +C  CR G E  C   +  G + DG + +Y ++           L   +A+P+ C+G+T YRA+  +   P +                Q A A+ G  +I +D  ++  +     GAD  ++
Sbjct:   15 LKDIDIPKP---KGAQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEMGDEVVGYSK-GDLVAVNPWQGEG--NCYYCRIGEEHLCDSPRWLGINFDGAYAEYVLNPHYKYMYKLRRLNAVEASPLTCSGITTYRAVRKASLDPTKTLVVVGAGGGLGTMAVQIAKAVGGATIIGVDVREEAVETAKRAGADYVIN 222          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH_SULSO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus solfataricus GN=adh PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDW-------PAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIK-WLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYA-VSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKD 781
            K  +VL++V+ +GVCH+D+H  +G +           +LP+  GHE AG I  +GD  +   K G  V +  W  +   +C  CR G E  C   +  G + DG + +Y  V + +++  +   L   +AAP+ C+G+T YRA+  +   P +                Q A A+ G  +I +D  ++  +     GAD +V      DP   I+ I +
Sbjct:   24 KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK-GDLVAVNPWQGEG--NCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITE 237          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.009e-12
Identity = 59/222 (26.58%), Postives = 93/222 (41.89%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCR---------------EGI------EATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 754
            + GEV ++V  +GVCHTD +   G  P +   P++ GHEGAG + ++G+G +T  K G  V I      C +C+ C+                G+        TC   Q   +    TF +Y V     +  +    PL++   + C   T Y A LN +K  PG                     A   R+I +D   +K    A +GA + ++ +DH+ P
Sbjct:   32 RAGEVRIKVVATGVCHTDAYTLSGSDP-EGAFPVILGHEGAGLVESVGEG-VTKFKAGDTV-IPLYVPQCGECKFCKNPKTNLCQKIRVTQGRGLMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGATECLNPKDHARP 250          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATW (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
The following BLAST results are available for this feature:
BLAST of DY258031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
TDH_XANOM5.917e-1334.90L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_AGRRK7.727e-1336.55L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
DOIAD_STRFR7.727e-1334.232-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
TDH_RHIE61.009e-1235.33L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
FRMA_HAEIN1.009e-1229.91S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
DHSO_BOMMO1.009e-1225.63Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
ADH_SULSR1.009e-1226.64NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH_SULSO1.009e-1227.85NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADHH_GADMO1.009e-1226.58Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
TDH_FRATW1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258031 ID=DY258031; Name=DY258031; organism=Citrus clementina; type=EST; length=1285bp
GACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGTCAC
AAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGACCAC
AATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGCTGA
CCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTATGCC
ACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGTCTA
CCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGGAGA
CGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAATGGC
TCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAGGCT
ACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTTCCA
ACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACGGAT
TACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTCTAT
CGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCATTGT
GGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCGCCA
TGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAACTT
TGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTCGGA
TCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTAGGAC
CTCACGCTGCTGTAGTTGCGGCAGCTGGTGCCGCCGCTTACGAGCAGGCT
CTCGAGTAATTCGTCCAACCGGTACTCTCGTTGCCGTCGGGTCTCCCCCC
AACACTTCCATAAAGGCCAACGTCTTCTTCCCCGTCTTCTACTCCAAGCG
CAAATCGGGGCCTAACTTGGGAACAGGCAAGATGCCCGTGGAAGCTCCCA
ATTTCCCTGCCCCGGAAAAGGTACCCCCCCCAAATCGAGTTTTGCCCCCT
TGGAAAATTTTTCCCGAAATTTTAAAAACCCCAGGGGAAAAAGGGGCAAA
ATCCCCCGGGGAGAATTTTTTTCCCAAAAAATTTTAAAACCCTTCTCCCC
CCCCCTCCCCCCCCTCCCCCCCCCCTCTTCCCCCCTTTTTTGGGGTTTTT
AACCTTTTTCCCCCCCGGGGGCCCCCCCCTTTCCCGGGGGGCTCGGGGGG
GGGGGCCCCCCCGAGGAAAAAGGAGGGGGGAGAAA
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