DY258031

Overview
NameDY258031
Unique NameDY258031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1285
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATM (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 INDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.318e-12
Identity = 59/235 (25.11%), Postives = 104/235 (44.26%), Query Frame = 2
Query:  161 GEVLVRVDYSGVCHTDLHAW--KGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKDMCD 790
            GEV +++ ++ +CHTD++ W  KG  P  PR   + GHE  G + ++G+G +T+LK G +  +      C +C +C+      C+  +             S +S+ G          TF +Y V +A  V  I    PL++   + C   T   A +N +K +PG                     +   R+I +D    + +L   +G ++FV+ +DH  P +  + I +M D
Sbjct:   36 GEVRLKILFTSLCHTDVYFWEAKGQTPLFPR---IFGHEAGGIVESVGEG-VTHLKPGDH-ALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQ--QVIAEMTD 263          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANCP (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANCB (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANC8 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:   19 PVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
The following BLAST results are available for this feature:
BLAST of DY258031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
TDH_FRATT1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATM1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATH1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF1.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT11.318e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
ADH1_TRIRP1.318e-1225.11Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
TDH_XANCP1.722e-1236.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANCB1.722e-1236.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANC81.722e-1236.36L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258031 ID=DY258031; Name=DY258031; organism=Citrus clementina; type=EST; length=1285bp
GACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGTCAC
AAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGACCAC
AATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGCTGA
CCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTATGCC
ACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGTCTA
CCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGGAGA
CGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAATGGC
TCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAGGCT
ACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTTCCA
ACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACGGAT
TACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTCTAT
CGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCATTGT
GGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCGCCA
TGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAACTT
TGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTCGGA
TCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTAGGAC
CTCACGCTGCTGTAGTTGCGGCAGCTGGTGCCGCCGCTTACGAGCAGGCT
CTCGAGTAATTCGTCCAACCGGTACTCTCGTTGCCGTCGGGTCTCCCCCC
AACACTTCCATAAAGGCCAACGTCTTCTTCCCCGTCTTCTACTCCAAGCG
CAAATCGGGGCCTAACTTGGGAACAGGCAAGATGCCCGTGGAAGCTCCCA
ATTTCCCTGCCCCGGAAAAGGTACCCCCCCCAAATCGAGTTTTGCCCCCT
TGGAAAATTTTTCCCGAAATTTTAAAAACCCCAGGGGAAAAAGGGGCAAA
ATCCCCCGGGGAGAATTTTTTTCCCAAAAAATTTTAAAACCCTTCTCCCC
CCCCCTCCCCCCCCTCCCCCCCCCCTCTTCCCCCCTTTTTTGGGGTTTTT
AACCTTTTTCCCCCCCGGGGGCCCCCCCCTTTCCCGGGGGGCTCGGGGGG
GGGGGCCCCCCCGAGGAAAAAGGAGGGGGGAGAAA
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